Version of seal in cloudbiolinux?

[Ashwin Bhattathiripad]

Hello,

I am trying to run Seal on cloudbiolinux from AWS. But I am running into errors. When I posted the error on the discussion group of Seal on Sourceforge, I was suggested may be I dont have the latest version of seal. May I know what version of seal is installed in CloudBioLinux Ubuntu 13.04 2013-07-05 - ami-31d59658 (N.Virginia)?

Also, I would like to know how to update the current version of seal?

Thanks,

Ashwin

[Brad Chapman]

Ashwin;
(cc'ing in Luca to bring all the discussion to one place; original
sourceforge thread: http://sourceforge.net/p/biodoop-seal/discussion/1764283/thread/f351f2e0/?limit=50#9226)

> I am trying to run Seal on cloudbiolinux from AWS. But I am running into
> errors. When I posted the error on the discussion group of Seal on
> Sourceforge, I was suggested may be I dont have the latest version of seal.
> May I know what version of seal is installed in CloudBioLinux Ubuntu 13.04
> 2013-07-05 - ami-31d59658 (N.Virginia)?

It has the latest version from the Python Package index (devel-20120307)

https://pypi.python.org/pypi/seal

It looks like Seal has moved back to sourceforge only hosting of
versions, so the latest appears to be 0.3.2:

http://sourceforge.net/projects/biodoop-seal/files/?source=navbar

> Also, I would like to know how to update the current version of seal?

Luca will have the best advice about what version to use since I don't
have a ton of experience with Seal. For fixing your immediate problem
you'll want to follow Seal's documentation to install. I can
simultaneously work on updating the CloudBioLinux build so it pulls the
recommended latest for the next AMI.

Brad

[Ashwin Bhattathiripad]

Hello Brad,

Thanks for getting back to me so soon.

Yea I was thinking of installing the latest seal on the AMI. But there are many dependencies associated with it. I could not do it properly in my local cluster. That's why I opted for CloudBioLinux.

Cheers.