Hi all,
If you want to install and run Clojure CLI tools, i.e. clojure and clj under Cygwin. You just install Linux version and change line 173 where install_dir is set to the following:
install_dir=`realpath.exe --relative-to=. /usr/local/lib/clojure`
Reason for change is that java expects Window paths to the jars. Fortunately relative paths are the same for Windows and for Cygwin.
Best, Tomasz