CLIPper install error

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Chongsheng He

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May 19, 2017, 4:30:24 PM5/19/17
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Hi, i got an error when i try to install CLIPper, the error looks like this:

"cythoning clipper/src/readsToWiggle.pyx to clipper/src/readsToWiggle.c


Error compiling Cython file:

------------------------------------------------------------

...

                    if (cur_pos > tx_end + 500) | ((cur_pos - tx_start) < 0) :

                        continue

                    if cigop == 0: #Exact matches only, doing this because it duplicates HTSeq behavior

                        explicit_locations[cur_pos - tx_start].add(read)

sc

            continue

^

------------------------------------------------------------


clipper/src/readsToWiggle.pyx:80:0: Possible inconsistent indentation"


I am using python 3.6.0::Anaconda 4.3.1 (64-bit).


Anybody got the same problem, any solutions? Thanks!

cmd

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Jan 15, 2020, 4:47:39 PM1/15/20
to CLIPper-discuss
when using release 1.2.1, delete line 79 which looks like the following

sc
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