error on running clipper

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jean

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Jun 25, 2015, 7:43:25 AM6/25/15

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Hi,

I was running clipper using the bams from tophat and got this error message.

"ERROR:root:transcript timed out local variable 'expanded_Nreads' referenced before assignment".

I thought that clipper might not be tested on tophat bams. So I re-run the mapping using gsnap as suggested, but same error message occurred. Does anyone know how to solve it. Thanks,