Install issues

[Robert Leach]

So I first got errors about missing modules that I'm guessing need to be listed as dependencies?: numpy and cython.

After I installed those, I got the following error:

warning: include path for stdlibc++ headers not found; pass '-std=libc++' on the command line to use the libc++ standard library instead [-Wstdlibcxx-not-found]

clipper/src/peaksmodule.cc:2:10: fatal error: 'iostream' file not found

#include <iostream>

         ^~~~~~~~~~

1 warning and 1 error generated.

error: command 'gcc' failed with exit status 1

[jose gacia]

I have the same problem, how can be possible that no one answereed from Agoust 28??

[Molly Braun]

When I ran CLIPper, I had to first load python, samtools, bedtools, and clipper to get it to work. Hope that helps!

On Tue, Nov 19, 2019 at 10:02 AM jose gacia <joseara...@gmail.com> wrote:

I have the same problem, how can be possible that no one answereed from Agoust 28??

--
You received this message because you are subscribed to the Google Groups "CLIPper-discuss" group.
To unsubscribe from this group and stop receiving emails from it, send an email to clipper-discu...@googlegroups.com.
To view this discussion on the web visit https://groups.google.com/d/msgid/clipper-discuss/d8739e29-75d1-4a69-95ff-79cc62486d26%40googlegroups.com.

[Robert Leach]

I did get Molly's reply that day, but apparently it went directly to me.  I didn't follow up because I was only reporting a discrepancy in the requirements listing/documentation.