number of iterations

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Nick Webster

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Jan 27, 2020, 1:14:03 PM1/27/20
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Hi, I received this warning message when running CLIPper on some eCLIP data from Eclipse.


WARNING:py.warnings:/Users/nicholaswebster/anaconda2/lib/python2.7/site-packages/scipy/interpolate/fitpack2.py:227: UserWarning: 

The maximal number of iterations maxit (set to 20 by the program)

allowed for finding a smoothing spline with fp=s has been reached: s

too small.

There is an approximation returned but the corresponding weighted sum

of squared residuals does not satisfy the condition abs(fp-s)/s < tol.

  warnings.warn(message)


Is this important and is there a way to increase the number of iterations? Or should I not worry about this?


Thanks, Nick

Gabriel Pratt

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Jan 27, 2020, 3:04:28 PM1/27/20
to Nick Webster, CLIPper-discuss
No need to worry

Gabriel Pratt


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