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10/18/25

Anyone interested in car detailing service

Anyone interested in car detailing service ? On Saturday, October 18, 2025 at 11:16:15 PM UTC+5 Jayme

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Anyone interested in car detailing service

Anyone interested in car detailing service ? On Saturday, October 18, 2025 at 11:16:15 PM UTC+5 Jayme

10/18/25

10/16/25

Special Group Discount – Chimney Cleaning 50% OFF

Anyone Interested in chimney cleaning service? Interested people PM me with your house address and

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Special Group Discount – Chimney Cleaning 50% OFF

Anyone Interested in chimney cleaning service? Interested people PM me with your house address and

10/16/25

9/25/25

$199 group discount for Air Vents/ Ducts Cleaning Services

Anyone Interested in vent cleaning service?

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$199 group discount for Air Vents/ Ducts Cleaning Services

Anyone Interested in vent cleaning service?

9/25/25

Hsuan-lin Her, Gabriel Pratt2

8/5/20

CLIPper 2.0, based on python 3 is released!

Thanks! Btw may I suggest you discontinue clipper discuss and move everything to github issues? On

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CLIPper 2.0, based on python 3 is released!

Thanks! Btw may I suggest you discontinue clipper discuss and move everything to github issues? On

8/5/20

7/16/20

invalid contig error when running clipper on dm3

Hello, I am trying to use clipper to identify peaks on eCLIP data generated from Dorosophila tissues.

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invalid contig error when running clipper on dm3

Hello, I am trying to use clipper to identify peaks on eCLIP data generated from Dorosophila tissues.

7/16/20

Sol Katzman, … Brittany Cain8

7/13/20

peak finding failed: boolean index did not match indexed array mm10 numpy-1.14.5

Sol, I am still using numpy 1.10.2. After running into several deprecation issues, I started mostly

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peak finding failed: boolean index did not match indexed array mm10 numpy-1.14.5

Sol, I am still using numpy 1.10.2. After running into several deprecation issues, I started mostly

7/13/20

Sol Katzman, Brittany Cain4

7/13/20

excessive clipper run time due to long timeout setting?

Hi Sol, I am using CLIPper 1.2.1, which can be cloned from the github master branch. This version

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excessive clipper run time due to long timeout setting?

Hi Sol, I am using CLIPper 1.2.1, which can be cloned from the github master branch. This version

7/13/20

엄다훈, Brittany Cain2

7/13/20

CLIPper input control option

Hi Dahun, As far as I am aware, CLIPper does not normalize to an input. It only calls peaks for the

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CLIPper input control option

Hi Dahun, As far as I am aware, CLIPper does not normalize to an input. It only calls peaks for the

7/13/20

엄다훈, Sol Katzman2

5/14/20

CLIPper installation error

You should always search postings. There are previous posts about install errors where you will find

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CLIPper installation error

You should always search postings. There are previous posts about install errors where you will find

5/14/20

4/11/20

clipper algorithms classic, gaussian not supported?

clipper version 0.2.0 In debugging another problem, I decided to see if the problem was somehow

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clipper algorithms classic, gaussian not supported?

clipper version 0.2.0 In debugging another problem, I decided to see if the problem was somehow

4/11/20

Elisabeth R, … Sol Katzman3

4/11/20

Clipper runtime?

Dear Elisabeth, See my new post about the default timeout setting. Check your logs for timeouts.

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Clipper runtime?

Dear Elisabeth, See my new post about the default timeout setting. Check your logs for timeouts.

4/11/20

Nick Webster, Gabriel Pratt2

1/27/20

number of iterations

No need to worry Gabriel Pratt On Mon, Jan 27, 2020 at 10:14 AM 'Nick Webster' via CLIPper-

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number of iterations

No need to worry Gabriel Pratt On Mon, Jan 27, 2020 at 10:14 AM 'Nick Webster' via CLIPper-

1/27/20

Nick Webster, … code4DNA7

1/24/20

CLIPper install problem

It may have something to do with the Scikit-learn version 0.20.4. Try installing version 0.18.2

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CLIPper install problem

It may have something to do with the Scikit-learn version 0.20.4. Try installing version 0.18.2

1/24/20

Chongsheng He, cmd2

1/15/20

CLIPper install error

when using release 1.2.1, delete line 79 which looks like the following sc On Friday, May 19, 2017 at

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CLIPper install error

when using release 1.2.1, delete line 79 which looks like the following sc On Friday, May 19, 2017 at

1/15/20

Robert Leach, … Molly Braun4

11/19/19

I did get Molly's reply that day, but apparently it went directly to me. I didn't follow up

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I did get Molly's reply that day, but apparently it went directly to me. I didn't follow up

11/19/19

Matthew Gazzara

6/25/19

Peak calling in extended 3'UTR regions

Hi, Just wondering how CLIPper behaves with peak calling on RBPs that bind downstream of the cleavage

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Peak calling in extended 3'UTR regions

Hi, Just wondering how CLIPper behaves with peak calling on RBPs that bind downstream of the cleavage

6/25/19

ven...@gmail.com, Xuan Ye2

4/29/19

clipper running error

try scikit-learn 0.18.2 version. On Mon, Apr 29, 2019 at 5:09 AM <ven...@gmail.com> wrote: Hi

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clipper running error

try scikit-learn 0.18.2 version. On Mon, Apr 29, 2019 at 5:09 AM <ven...@gmail.com> wrote: Hi

4/29/19

3/6/19

Hi Clipper team, We have run clipper on several eCLIP datasets and would now like to estimate IDR on

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Hi Clipper team, We have run clipper on several eCLIP datasets and would now like to estimate IDR on

3/6/19

Manasa Ramakrishna

9/21/18

Looking for hg19.AS.STRUCTURE.COMPILED.gff in the wrong place

Dear Michael, I've been trying to use CLIPper to analyse some of the iCLIP data from my lab. I

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Looking for hg19.AS.STRUCTURE.COMPILED.gff in the wrong place

Dear Michael, I've been trying to use CLIPper to analyse some of the iCLIP data from my lab. I

9/21/18

Tsviya Olender, Jie Wu2

9/12/18

clipper wont run on bacterial genome

I got the same problem. Most of the parameters in clipper are not useful. And they hardly reply to

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clipper wont run on bacterial genome

I got the same problem. Most of the parameters in clipper are not useful. And they hardly reply to

9/12/18

morluriew...@gmail.com

5/10/17

--input-bam doesn't seem to work

Hi, I ran clipper without an input file, and then with one, and got a file that looks identical in

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--input-bam doesn't seem to work

Hi, I ran clipper without an input file, and then with one, and got a file that looks identical in

5/10/17

Francesca Andriolo

3/31/17

Error running CLIPper

Hi all, I'm trying to run CLIPer, but I got the following error: /usr/lib64/python2.7/site-

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Error running CLIPper

Hi all, I'm trying to run CLIPer, but I got the following error: /usr/lib64/python2.7/site-

3/31/17

Nejc Haberman, Martin Smith5

1/10/17

Error - running clipper

Hi Gabriel, this version worked on eCLIP BAM data. Now I tried it on iCLIP single-end data and

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Error - running clipper

Hi Gabriel, this version worked on eCLIP BAM data. Now I tried it on iCLIP single-end data and

1/10/17

3/3/16

Normalization of CLIP peaks by RNA abundance

Hi, I am using CLIPer for iCLIP data analysis. I was wondering how to normalize peaks by transcript

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Normalization of CLIP peaks by RNA abundance

Hi, I am using CLIPer for iCLIP data analysis. I was wondering how to normalize peaks by transcript

3/3/16

6/25/15

error on running clipper

Hi, I was running clipper using the bams from tophat and got this error message. "ERROR:root:

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error on running clipper

Hi, I was running clipper using the bams from tophat and got this error message. "ERROR:root:

6/25/15

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