Hi Majid,
I am one of the DKPro Core developers. DKPro Core and ClearTK developed in parallel and influenced each other quite a bit. We actually worked together quite intensively on uimaFIT (which was originally uutuc and created by the ClearTK folks and now is Apache uimaFIT maintained by myself).
At a point in time, we were considering to set up a common type system, but eventually never got around to doing it.
ClearTK and DKPro Core have always had different foci and different approaches to solve particular issues. E.g. DKPro Core is very strong in dynamic model loading and parametrization. ClearTK uses Java generics in very clever ways and has some interesting architectural approaches. ClearTK has always had a very strong ML focus while DKPro TC has picked up on that topic rather recently.
So you see, both projects have their benefits and users.
Cheers,
-- Richard