Problem in installing clawpack
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Muhammad Ali
Jul 16, 2024, 6:49:18 AM (yesterday) Jul 16
to claw-users
Hi there,
I am facing problems in properly installing clawpack on one of my machines. After cloning and repo once i run the last command "pip install --no-build-isolation -e ./" I get a errors I pasted below. Regards
git clone https://github.com/clawpack/clawpack.git clawpack
cd clawpack
git submodule init
git submodule update
pip install --no-build-isolation -e ./
----------------------------------ERROR MSG--------------------------
Obtaining file:///home/dev/clawpack
Checking if build backend supports build_editable ... done
Preparing editable metadata (pyproject.toml) ... error
error: subprocess-exited-with-error
× Preparing editable metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [228 lines of output]
+ meson setup --reconfigure /home/dev/clawpack /home/dev/clawpack/build/cp310 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/dev/clawpack/build/cp310/meson-python-native-file.ini
The Meson build system
Version: 1.5.0
Source dir: /home/dev/clawpack
Build dir: /home/dev/clawpack/build/cp310
Build type: native build
Program metadata.py found: YES (/home/dev/venv/bin/python /home/dev/clawpack/metadata.py)
Project name: clawpack
Project version: 5.10.0
Fortran compiler for the host machine: gfortran (gcc 11.4.0 "GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0")
Fortran linker for the host machine: gfortran ld.bfd 2.38
C compiler for the host machine: cc (gcc 11.4.0 "cc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0")
C linker for the host machine: cc ld.bfd 2.38
Host machine cpu family: x86_64
Host machine cpu: x86_64
Program python found: YES (/home/dev/venv/bin/python)
Message: f2py version: 2.0.0
Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES (cached)
Compiler for Fortran supports arguments -Wno-unused-variable: YES (cached)
Compiler for Fortran supports arguments -Wno-unused-label: YES (cached)
Compiler for C supports arguments -Wno-misleading-indentation: YES (cached)
Compiler for C supports arguments -Wno-unused-but-set-variable: YES (cached)
Compiler for C supports link arguments -Wl,-no_compact_unwind: NO (cached)
Build targets in project: 115
clawpack 5.10.0
User defined options
Native files: /home/dev/clawpack/build/cp310/meson-python-native-file.ini
buildtype : release
b_ndebug : if-release
b_vscrt : md
Found ninja-1.11.1.git.kitware.jobserver-1 at /home/dev/venv/bin/ninja
+ /home/dev/venv/bin/ninja
[1/362] Compiling Fortran object pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so.p/meson-generated_.._advection_2d-f2pywrappers.f.o
[2/362] Compiling Fortran object pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so.p/.._.._examples_advection_reaction_2d_rpt2_dummy.f90.o
[3/362] Compiling Fortran object pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so.p/.._.._examples_advection_reaction_2d_rpn2_vc_advection_vector.f90.o
[4/362] Linking target pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so
[5/362] Generating riemann/riemann/acoustics_1D_ptwisemodule.c with a custom command
[6/362] Compiling C object pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o
FAILED: pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o
cc -Ipyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p -Ipyclaw/src/pyclaw -I../../pyclaw/src/pyclaw -I/home/dev/venv/lib/python3.10/site-packages/numpy/_core/include -I/home/dev/venv/lib/python3.10/site-packages/numpy/f2py/src -I/usr/include/python3.10 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -O3 -Wno-misleading-indentation -Wno-unused-but-set-variable -fPIC -MD -MQ pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o -MF pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o.d -o pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o -c ../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c
In file included from /home/dev/venv/lib/python3.10/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
from /home/dev/venv/lib/python3.10/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
from ../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:7:
/home/dev/venv/lib/python3.10/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:59:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
59 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:59:57: note: each undeclared identifier is reported only once for each function it appears in
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:135:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
135 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:236:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
236 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:350:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
350 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:440:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
440 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:583:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
583 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:664:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
664 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:761:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
761 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:880:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
880 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:977:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
977 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1157:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1157 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1243:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1243 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1348:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1348 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1472:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1472 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1577:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1577 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1810:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1810 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1901:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1901 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2018:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2018 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2147:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2147 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2264:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2264 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2569:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2569 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2665:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2665 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2805:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2805 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2939:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2939 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3079:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3079 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3478:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3478 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3579:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3579 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3733:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3733 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3872:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3872 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4026:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4026 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4545:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4545 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4653:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4653 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4831:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4831 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4977:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4977 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:5155:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
5155 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
[7/362] Compiling C object riemann/riemann/acoustics_1D_ptwise.cpython-310-x86_64-linux-gnu.so.p/meson-generated_.._acoustics_1D_ptwisemodule.c.o
[8/362] Compiling C object riemann/riemann/acoustics_1D_ptwise.cpython-310-x86_64-linux-gnu.so.p/_home_dev_venv_lib_python3.10_site-packages_numpy_f2py_src_fortranobject.c.o
ninja: build stopped: subcommand failed.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
I am facing problems in properly installing clawpack on one of my machines. After cloning and repo once i run the last command "pip install --no-build-isolation -e ./" I get a errors I pasted below. Regards
git clone https://github.com/clawpack/clawpack.git clawpack
cd clawpack
git submodule init
git submodule update
pip install --no-build-isolation -e ./
----------------------------------ERROR MSG--------------------------
Obtaining file:///home/dev/clawpack
Checking if build backend supports build_editable ... done
Preparing editable metadata (pyproject.toml) ... error
error: subprocess-exited-with-error
× Preparing editable metadata (pyproject.toml) did not run successfully.
│ exit code: 1
╰─> [228 lines of output]
+ meson setup --reconfigure /home/dev/clawpack /home/dev/clawpack/build/cp310 -Dbuildtype=release -Db_ndebug=if-release -Db_vscrt=md --native-file=/home/dev/clawpack/build/cp310/meson-python-native-file.ini
The Meson build system
Version: 1.5.0
Source dir: /home/dev/clawpack
Build dir: /home/dev/clawpack/build/cp310
Build type: native build
Program metadata.py found: YES (/home/dev/venv/bin/python /home/dev/clawpack/metadata.py)
Project name: clawpack
Project version: 5.10.0
Fortran compiler for the host machine: gfortran (gcc 11.4.0 "GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0")
Fortran linker for the host machine: gfortran ld.bfd 2.38
C compiler for the host machine: cc (gcc 11.4.0 "cc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0")
C linker for the host machine: cc ld.bfd 2.38
Host machine cpu family: x86_64
Host machine cpu: x86_64
Program python found: YES (/home/dev/venv/bin/python)
Message: f2py version: 2.0.0
Compiler for Fortran supports arguments -Wno-unused-dummy-argument: YES (cached)
Compiler for Fortran supports arguments -Wno-unused-variable: YES (cached)
Compiler for Fortran supports arguments -Wno-unused-label: YES (cached)
Compiler for C supports arguments -Wno-misleading-indentation: YES (cached)
Compiler for C supports arguments -Wno-unused-but-set-variable: YES (cached)
Compiler for C supports link arguments -Wl,-no_compact_unwind: NO (cached)
Build targets in project: 115
clawpack 5.10.0
User defined options
Native files: /home/dev/clawpack/build/cp310/meson-python-native-file.ini
buildtype : release
b_ndebug : if-release
b_vscrt : md
Found ninja-1.11.1.git.kitware.jobserver-1 at /home/dev/venv/bin/ninja
+ /home/dev/venv/bin/ninja
[1/362] Compiling Fortran object pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so.p/meson-generated_.._advection_2d-f2pywrappers.f.o
[2/362] Compiling Fortran object pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so.p/.._.._examples_advection_reaction_2d_rpt2_dummy.f90.o
[3/362] Compiling Fortran object pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so.p/.._.._examples_advection_reaction_2d_rpn2_vc_advection_vector.f90.o
[4/362] Linking target pyclaw/src/pyclaw/advection_2d.cpython-310-x86_64-linux-gnu.so
[5/362] Generating riemann/riemann/acoustics_1D_ptwisemodule.c with a custom command
[6/362] Compiling C object pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o
FAILED: pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o
cc -Ipyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p -Ipyclaw/src/pyclaw -I../../pyclaw/src/pyclaw -I/home/dev/venv/lib/python3.10/site-packages/numpy/_core/include -I/home/dev/venv/lib/python3.10/site-packages/numpy/f2py/src -I/usr/include/python3.10 -fvisibility=hidden -fdiagnostics-color=always -DNDEBUG -D_FILE_OFFSET_BITS=64 -Wall -Winvalid-pch -O3 -Wno-misleading-indentation -Wno-unused-but-set-variable -fPIC -MD -MQ pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o -MF pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o.d -o pyclaw/src/pyclaw/reconstruct.cpython-310-x86_64-linux-gnu.so.p/limiters_weno_reconstruct.c.o -c ../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c
In file included from /home/dev/venv/lib/python3.10/site-packages/numpy/_core/include/numpy/ndarraytypes.h:1909,
from /home/dev/venv/lib/python3.10/site-packages/numpy/_core/include/numpy/ndarrayobject.h:12,
from ../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:7:
/home/dev/venv/lib/python3.10/site-packages/numpy/_core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:59:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
59 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:59:57: note: each undeclared identifier is reported only once for each function it appears in
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:135:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
135 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:236:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
236 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:350:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
350 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k3’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:440:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
440 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:583:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
583 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:664:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
664 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:761:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
761 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:880:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
880 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k4’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:977:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
977 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1157:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1157 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1243:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1243 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1348:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1348 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1472:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1472 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k5’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1577:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1577 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1810:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1810 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:1901:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
1901 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2018:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2018 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2147:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2147 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k6’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2264:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2264 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2569:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2569 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2665:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2665 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2805:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2805 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:2939:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
2939 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k7’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3079:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3079 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3478:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3478 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3579:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3579 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3733:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3733 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:3872:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
3872 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k8’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4026:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4026 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_smoothness_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4545:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4545 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_left_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4653:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4653 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_left_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4831:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4831 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_weights_right_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:4977:57: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
4977 | if (sigma_py->nd != 2 || sigma_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c: In function ‘py_reconstruct_right_k9’:
../../pyclaw/src/pyclaw/limiters/weno/reconstruct.c:5155:49: error: ‘PyArray_DOUBLE’ undeclared (first use in this function); did you mean ‘PyArray_DTYPE’?
5155 | if (f_py->nd != 1 || f_py->descr->type_num != PyArray_DOUBLE)
| ^~~~~~~~~~~~~~
| PyArray_DTYPE
[7/362] Compiling C object riemann/riemann/acoustics_1D_ptwise.cpython-310-x86_64-linux-gnu.so.p/meson-generated_.._acoustics_1D_ptwisemodule.c.o
[8/362] Compiling C object riemann/riemann/acoustics_1D_ptwise.cpython-310-x86_64-linux-gnu.so.p/_home_dev_venv_lib_python3.10_site-packages_numpy_f2py_src_fortranobject.c.o
ninja: build stopped: subcommand failed.
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
Axel Loïc Giboulot
Jul 16, 2024, 8:20:35 AM (yesterday) Jul 16
to claw-users
Hi!
I think this is due to the newest version of numpy (2.0.0), here's the issue on GitHub: https://github.com/numpy/numpy/issues/24300
Installing a prior version of numpy solved this issue for me:
pip install numpy==1.26.4
Best,
Axel
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