Extract unique kmers for every genome in the databases

[Jens]

Hi,

This has been touched upon previously and that option "tsk" could be provided to do this. However, currently the documentation says:

--tsk,                   to request a detailed creation of the database (target specific k-mers files). This option is no more supported.

How can I go about to extract unique kmers for the different species in my database? I'm interested to do this for a larger number of species in the created database.

[Rachid]

Hello Jens,

Thank you for your interest! This feature has been retired because it would assume that the user can have access to high amount of disk space (~150GB or more).

However, we will address in the next release of CLARK coming on next month and will you let you once it is available.

Cheers,

Rachid