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Vitor C. Piro
Jun 21, 2017, 7:16:40 AM6/21/17
to CLARK Users
Dear Clark team,
I'm trying to integrate CLARK on a pipeline. I would like to know how the db file name is generated. For example, for the standard bacteria database I get the files: db_central_k31_t1461_s1610612741_m0.tsk. I understood that 1461 are the unique number of taxids in the targets.txt file but what does the 1610612741 stand for? can I also get this information from targets.txt?
Best,
Vitor
I'm trying to integrate CLARK on a pipeline. I would like to know how the db file name is generated. For example, for the standard bacteria database I get the files: db_central_k31_t1461_s1610612741_m0.tsk. I understood that 1461 are the unique number of taxids in the targets.txt file but what does the 1610612741 stand for? can I also get this information from targets.txt?
Best,
Vitor
Rachid
Jun 21, 2017, 7:45:50 PM6/21/17
to CLARK Users
Hi Vitor,
It corresponds to the hash table size, which can be changed in the settings (of course, before building any database).
Cheers,
Rachid
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