ONT reads

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Alexander Nagy

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Dec 4, 2019, 3:19:24 PM12/4/19

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Hi, any experiences with metagenomic classification of oxford nanopore reads by Clark? Thanks, Alexander

Rachid

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Dec 4, 2019, 3:37:30 PM12/4/19

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Hi Alexander!

I have been running CLARK tools on various samples/datasets produced by ONT sequences. I recommend working with CLARK-S as it provides a higher sensitivity (the spaced-seeding being very appropriate/helpful on high error rate-generated sequences).

Best,

Rachid

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