Failed to recognize option: ./samples.L.txt

[Karsten Liere]

Hi,

just tried to get my hang on CLARK. However, when running this command:

$ ./classify_metagenome.sh -O ./samples.R.txt ./samples.L.txt -R ./result -n 24 --light

I get the following error:

Failed to recognize option: ./samples.L.txt

What do I miss here?

Thanks for any ideas,

Karsten

[Rachid]

Hi Karsten,

It does seem to me you are trying to analyze one or several datasets of paired-end reads.

In that case, please use the option "-P" instead of "-O" in that command.

Also, please do not hesitate to consult the README file, in which we do explain all parameters with examples.

Cheers,

Rachid