Dear CLARK users:
A new version is now available, V1.2.6:
- A new script "extractSequences.sh" (cf. Overview tab, and README) is added. It allows to extract/filter from the input data, the sequences identified to a specific taxon once the classification is done.
This can be used for downstream analysis (analysis of contaminants, genome assembly, etc.).
- The script "estimate_abundance.sh" allows now to output the results in the mpa format (tab-delimited format from MetaPhlAn).
- Code improvements and bug fixes are included.
Best,
Rachid