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Rachid

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Feb 21, 2019, 3:40:11 PM2/21/19
to CLARK Users
Dear CLARK users:

A new version is now available, V1.2.6:
- A new script "extractSequences.sh" (cf. Overview tab, and README) is added. It allows to extract/filter from the input data, the sequences identified to a specific taxon once the classification is done. 
This can be used for downstream analysis (analysis of contaminants, genome assembly, etc.). 
The script "estimate_abundance.sh" allows now to output the results in the mpa format (tab-delimited format from MetaPhlAn). 
- Code improvements and bug fixes are included. 

Best,
Rachid
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