IndexError: list index out of range

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Neha

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Mar 16, 2018, 6:00:29 AM3/16/18
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I run BETA basic of version 1.0.7. The command i used is BETA basic -p C.bed -e gene_exp_new.diff -k CUF -r tair10.gff3 --da 700 --cutoff 1e-1 -o basic.
I got the following error. Please give me suggestion. Thanks in advance

[15:21:25] Read file <C.bed> OK! All <10000> peaks.
[15:21:26] Process <0> genes
[15:21:28] Finished! Preliminary results saved into temporary file: <NA.txt>
[11789, 11067]
[15:21:28] Genes were seprated to two parts: up regulated and down regulated.
cut: write error: Broken pipe
cut: write error: Broken pipe
[15:21:28] Prepare file for the Up/Down Test
Traceback (most recent call last):
  File "/usr/bin/BETA", line 4, in <module>
    __import__('pkg_resources').run_script('BETA-Package==1.0.7', 'BETA')
  File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 750, in run_script
    self.require(requires)[0].run_script(script_name, ns)
  File "/usr/lib/python2.7/site-packages/pkg_resources/__init__.py", line 1534, in run_script
    exec(script_code, namespace, namespace)
  File "/usr/lib/python2.7/site-packages/BETA_Package-1.0.7-py2.7.egg/EGG-INFO/scripts/BETA", line 193, in <module>
   
  File "/usr/lib/python2.7/site-packages/BETA_Package-1.0.7-py2.7.egg/EGG-INFO/scripts/BETA", line 183, in main
   
  File "build/bdist.linux-x86_64/egg/BETA/runbeta.py", line 71, in basicrun
  File "build/bdist.linux-x86_64/egg/BETA/expr_combine.py", line 203, in ChGS
  File "build/bdist.linux-x86_64/egg/BETA/Up_Down_score.py", line 296, in scorerun
  File "build/bdist.linux-x86_64/egg/BETA/Up_Down_score.py", line 97, in read_score_file
IndexError: list index out of range

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