Nothing working with BETA-Cistrom

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Abdo Abdo

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Jun 9, 2019, 9:43:11 AM6/9/19
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Dear ,
I am using BETA -Cistrom (Basic, Plus, and Minus) and nothing is working.
I even rerun a previous job with the same parameters and it did not work.
I already sent an error report via cistrom.

Could you please help?

Many thanks in advance.

Abdulkader 
cistrom_1.png
cistrom_2.png

Geri Law

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Jul 5, 2019, 2:08:35 AM7/5/19
to Cistrome

Hello Abdo,


I'm another cistrome user. I too am experiencing similar failures with BETA on web browser as you describe. An error message was sent through over a month ago using the Report this error to the Galaxy Team mailer, this issue remains unresolved.


Error details below:


Error messages as follows:

BETA-minus:

cp: cannot stat 'BETA_OUTPUT/NA_targets.txt': No such file or directory cp: cannot stat 'BETA_OUTPUT/NA_targets_associated_peaks.txt': No such file or directory

BETA-basic:

uploaded wig file, size: 33.4 Mb

BETA-plus:

uploaded bed file, size: 104.8 Kb

cp: cannot stat 'BETA_OUTPUT/NA_function_prediction.pdf': No such file or directory
cp: cannot stat 'BETA_OUTPUT/NA_uptarget.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/NA_downtarget.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/NA_uptarget_associate_peaks.bed': No such file or directory
cp: cannot stat 'BETA_OUTPUT/NA_downtarget_associate_peaks.bed': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/UP_MOTIFS.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/DOWN_MOTIFS.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/UP_NON_MOTIFS.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/DOWN_NON_MOTIFS.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/DIFFERENTIAL_MOTIF_UP_DOWN.txt': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/betamotif.html': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/*.js': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/*.css': No such file or directory
cp: cannot stat 'BETA_OUTPUT/motifresult/img': No such file or directory

and produced the following output:

BETA plus -p /project/Cistrome/CistromeAP/galaxy_database/files/001/578/dataset_1578899.dat -e /project/Cistrome/CistromeAP/galaxy_database/files/001/579/dataset_1579333.dat -g hg19 -k O --info 1,2,3 --method score --gs /project/Cistrome/CistromeAP/static_libraries/assembly/hg19/rawgenome/hg19.fasta --gname2 -r /home/jian/miniconda3/envs/cistromeap/lib/python2.7/site-packages/BETA_Package-1.0.7-py2.7.egg/BETA/references/hg19.refseq -d 100000 --pn 10000 -n NA --da 0.5 --df 1.0 -c 1


Is there any scope for this to be investigated? When will the BETA web server be functional again?

Thank you in advance!

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