Beta-basic Error Cistrome-Galaxy

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nicholas...@uconn.edu

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Oct 23, 2018, 12:19:01 PM10/23/18
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I cannot seem to run BETA basic using a bed file from cistromeDB and my own DESeq2 expression data. I input the correct columns for geneID, log2 fold-change, and adjusted p-value, but it just gives me error messages.  Have others had success with this tool?  
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job id: 865673
tool id: beta_basic
tool version: 1.0.0
job pid or drm id: 3541
job tool version: 
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job command line:
command /bin/bash /data4/CistromeAP/galaxy_database/job_working_directory/000/865/865673/tmpK2eGcL
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job stderr:
cp: cannot stat ?BETA_OUTPUT/NA_function_prediction.pdf?: No such file or directory
cp: cannot stat ?BETA_OUTPUT/NA_uptarget.txt?: No such file or directory
cp: cannot stat ?BETA_OUTPUT/NA_downtarget.txt?: No such file or directory
cp: cannot stat ?BETA_OUTPUT/NA_uptarget_associate_peaks.bed?: No such file or directory
cp: cannot stat ?BETA_OUTPUT/NA_downtarget_associate_peaks.bed?: No such file or directory

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job stdout:
BETA basic -p /data4/CistromeAP/galaxy_database/files/001/525/dataset_1525499.dat -e /data4/CistromeAP/galaxy_database/files/001/525/dataset_1525757.dat -g mm10 -k O --info 1,3,6 --method distance --gname2 -r /usr/local/lib/python2.7/dist-packages/BETA_Package-1.0.7-py2.7.egg/BETA/references/mm10.refseq -d 100000 --pn 10000 -n NA --da 0.5 --df 1.0 -c 1
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