Can't locate Circos.pm in @INC

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LeeCK

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Aug 5, 2019, 5:18:51 PM8/5/19
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Mac Pro (OS 10.14.6)  circos-0.69-9


(base) ligengdeMacBook-Pro:3 ligeng$ ./circos

Can't locate Circos.pm in @INC (you may need to install the Circos module) (@INC contains: /Users/ligeng/Desktop/3/lib /Users/ligeng/Desktop/3/../lib /Users/ligeng/Desktop/3 /opt/local/lib/perl5/site_perl/5.28/darwin-thread-multi-2level /opt/local/lib/perl5/site_perl/5.28 /opt/local/lib/perl5/vendor_perl/5.28/darwin-thread-multi-2level /opt/local/lib/perl5/vendor_perl/5.28 /opt/local/lib/perl5/5.28/darwin-thread-multi-2level /opt/local/lib/perl5/5.28) at ./circos line 490.

BEGIN failed--compilation aborted at ./circos line 490.



“Circos module” does not exist in https://metacpan.org/


how to solve this problem?

Josie

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Oct 4, 2023, 8:04:55 PM10/4/23
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Has anybody else gotten stuck here at early stages? I'm here in 2023, hoping for the answer (●'◡'●)

Martin

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Oct 4, 2023, 8:21:55 PM10/4/23
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Did you install Circos as described here


If you moved the bin/ directory relative to the lib/ directory, then bin/circos may be unable to find lib/Circos.pm.

What is the location of all the files in your installation?

m

Josie

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Oct 4, 2023, 8:33:08 PM10/4/23
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Thank you so much for replying! Both the 'bin' and 'lib' folders are currently located within a 'circos' folder which is directly on my C: drive

I can see the lib folder contains Circos.pm... should I move 'lib' elsewhere?

Sorry for my ignorance - new to this!

Martin

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Oct 21, 2023, 4:35:11 PM10/21/23
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Don't move any files or directories in the distribution.

You should have

circos-v0.69-9/bin/circos
circos-v0.69-9/lib/Circos.pm

then

cd circos-v0.69-9
bin/circos

Circos will automatically look to include bin/../lib into its path for finding modules.
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