ChIP seq track help needed

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Tiffany Ge

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May 5, 2021, 5:17:17 PMMay 5
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Hi, 
I've managed to make a circos plot with chromosomes and their interchromosomal interactions but I'd like to include a ChIP seq plot in my diagram but I don't know how. Ideally, I'd like to make it look like the ones that can be generated from HOMER (see http://homer.ucsd.edu/homer/interactions/circos.html). 

I have a bed file but I'm not sure how the input file is supposed to look as well, so short examples would be extremely helpful as well! 

Thanks,
Tiffany

Martin Krzywinski

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May 5, 2021, 5:23:45 PMMay 5
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Are you looking to create a histogram of peaks?

If so, the input format is

CHR START END VALUE {param}

and then follow the histogram tutorial


Martin Krzywinski


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Tiffany Ge

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May 5, 2021, 6:17:40 PMMay 5
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I want to create a histogram of the peaks but I'm not sure how to write that into the config file so it looks like the image from HOMER (see website)



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