Hi Everyone!
I am trying to plot a circos plot that demonstrates each mutant (mt1, mt2,mt3, mt4,mt5,mt6,mt7) in each block. Each block will also have a bar plot that represents the DEG fold change for each. I tried to plot, but it is not even close to what I would like to have as the final plot. I did not get to turn the histogram into a bar plot.
So far, I have tried to use recipes from the website and code from here, but I am still not successful. Please, may someone help me?
my data table contains
chr start end value (foldchange)
mt1 1 2 0.5
mt1 2 3. -0.5
...
...
mt2 1 2 0.5
mt2 2 3 -0.5
# 1.3 IDEOGRAM SELECTION, SCALE, COLOR AND ORIENTATION
karyotype = data/karyotype/m.txt
chromosomes_units = 1
chromosomes_display_default = no
chromosomes_color = hs1=blue,hs2=blue,hs3=green,hs4=green,hs5=orange,hs6=orange
##### Histogram
##Each histogram is defined in a <plot> block within an enclosing <plots> block.
<plots>
<plot>
file= histogram_positive_m.conf
color= black
type = histogram
r1 = 0.95r
r0 = 0.6r
min = -5
max = 5
extend_bin = no
thickness = 2
<backgrounds>
<background>
color = vvlgrey
</background>
</backgrounds>
<axes>
<axis>
spacing = 1
color = lgrey
thickness = 2
</axis>
</axes>
<rules>
<rule>
condition = var(value) > 0
fill_color = magenta
</rule>
<rule>
condition = var(value) <= 0
fill_color = green
</rule>
</rules>
</plot>
</plots>
<<include ideogram.conf>>
<<include ticks.conf>>
<image>
<<include etc/image.conf>>
</image>
<<include colors_fonts_patterns.conf>>
<<include etc/housekeeping.conf>>
Thank you in advance so much for any feedback and for your help!