Modiciation of non-creatable array value attempted

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gibberwocky

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Feb 6, 2012, 4:34:50 PM2/6/12
to Circos
I'm attempting to add a text track of gene names. Originally the list
was ~200 long, but I've tried it with just 3 genes now assigned to
different chromosomes in case there was an issue related to the text
stacking up. The following error keeps flagging up which appears to
relate to the label size:

Modification of non-creatable array value attempted, subscript -10 at /
home/plxdw1/Downloads/circos-0.55/bin/../lib/Circos.pm line 2120, <F>
line 25201.

I've tried different label sizes with success at removing the error,
but the text is then not displayed on the image.

<plot>
type = text
file = genelist.txt
color = black
r0 = 0.4
r1 = 0.8
show_links = yes
link_dims = 4p,4p,8p,4p,4p
link_thickness = 2p
link_color = red
label_size = 24p
label_font = condensed
padding = 0p
rpadding = 0p
</plot>


Example of genelist.txt

gga1 38904 43343 AMY2A
gga2 455926 613642 LOC424334
gga3 9953631 10030404 PLA2G4A

Martin

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Feb 6, 2012, 4:46:33 PM2/6/12
to Circos

> r0 = 0.4
> r1 = 0.8

You want

r0 = 0.4r
r1 = 0.8r

See whether the error still occurs after you make this change.

M

gibberwocky

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Feb 6, 2012, 6:54:27 PM2/6/12
to Circos
Thanks, had to be something small and obvious didn't it!

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