Circos::Error::fatal_error('parsedata', 'bad_field_count'

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Shivangi Agarwal

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May 9, 2021, 1:39:55 PMMay 9
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Hello,

I am trying to plot circos for CNV gain and amplification events. I am using command as 
circos -conf circos -conf circos_final_CNV_heatmap-see.conf.

But getting error as:

  Stack trace:

 at /usr/local/Cellar/circos/0.69-9/libexec/bin/../lib/Circos/Error.pm line 425, <F> line 2.

Circos::Error::fatal_error('parsedata', 'bad_field_count', 'hs1 199000001 200000000 8\x{d}hs2 1 1000000 5\x{d}hs2 1000001 2000000...', '/Users/shivangiagarwal/Downloads/2/graphs-Mam/577-573.txt', 'scatter', 'chr start end value options') called at /usr/local/Cellar/circos/0.69-9/libexec/bin/../lib/Circos/IO.pm line 200

Circos::IO::read_data_file('/Users/shivangiagarwal/Downloads/2/graphs-Mam/577-573.txt', 'scatter', 'HASH(0x7ffcbc4a3fa8)', 'HASH(0x7ffcb6f61b48)') called at /usr/local/Cellar/circos/0.69-9/libexec/bin/../lib/Circos.pm line 1472

Circos::run('Circos', '_argv', '-conf circos_final_CNV_heatmap_losss-see.conf', 'configfile', 'circos_final_CNV_heatmap_losss-see.conf', '_cwd', '/Users/shivangiagarwal/Downloads/2/graphs-Mam') called at /usr/local/Cellar/circos/0.69-9/libexec/bin/circos line 536


I am attaching a script and input file here for your reference. Please have a look and help me. I would really appreciate your help and support.



With regards
Shivangi Agarwal
"Winning our goal is not the toughest victory, but winning our patience to achieve that goal is the toughest one".
577-573.txt
circos_final_CNV_heatmap_see.conf
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