I've been trying to use Circos (using Galaxy) for plotting chromatin interaction in a specific part of the genome. I tried using this type of data:
chr1 start1 end1 chr2 start2 end2
chr6 69400000 69450000 chr6 69900000 69950000
chr6 69400000 69450000 chr6 70000000 70050000
chr6 69450000 69500000 chr6 69850000 69900000
I get an error like this:
"slice indices must be integers or None or have an __index__ method"
Any idea what is the problem?
Also, when I change the parameters to show chr6 instead of my area of interest (~2MB), I get a plot but it is empty.