No ribbons in my output

[saket chandra]

Dear Sir,

I am trying to generate the synteny output using circos. When I run the test dataset I get the result but when I use my dataset I did not get the result. Please guide me to get out of it. I am attaching the test conf file as well as my own conf file with output.

Thanks for your response in advance, I am using ubuntu 16.04 

[Pietro D'Addabbo]

Personally, I'm used to the "two lines format" of the link/ribbon ( http://circos.ca/documentation/tutorials/links/basic_links/ ) 

but I noticed that your file have different words for the same chromosome in karyotype/circos.conf with respect to the data files.

Circos is "case sensitive":

karyotype.new.txt and mydatacircos.conf contain "chr1", while ribbon.twist.txt contains "Chr1".

Try uniforming the chromosome nomenclature in all your file.

Best wishes.

Pietro

[saket chandra]

Thanks

[Vinutha KS]

Saket 

Did you get the plots in ubuntu?/

Can you help me understand and plot for myself 

Thanks

Vinutha