I want to highlight the some region in ideogram but getting error from config file.
This my karyotype input file.
chr - gg1 1 0 197608386 chr1
chr - gg2 2 0 149682049 chr2
chr - gg3 3 0 110838418 chr3
chr - gg4 4 0 91315245 chr4
chr - gg5 5 0 59809098 chr5
chr - gg6 6 0 36374701 chr6
chr - gg7 7 0 36742308 chr7
chr - gg8 8 0 30219446 chr8
chr - gg9 9 0 24153086 chr9
chr - gg10 10 0 21119840 chr10
chr - gg11 11 0 20200042 chr11
chr - gg12 12 0 20387278 chr12
chr - gg13 13 0 19166714 chr13
chr - gg14 14 0 16219308 chr14
chr - gg15 15 0 13062184 chr15
chr - gg16 16 0 2844601 chr16
chr - gg17 17 0 10762512 chr17
chr - gg18 18 0 11373140 chr18
chr - gg19 19 0 10323212 chr19
chr - gg20 20 0 13897287 chr20
chr - gg21 21 0 6844979 chr21
chr - gg22 22 0 5459462 chr22
chr - gg23 23 0 6149580 chr23
chr - gg24 24 0 6491222 chr24
chr - gg25 25 0 3980610 chr25
chr - gg26 26 0 6055710 chr26
chr - gg27 27 0 8080432 chr27
chr - gg28 28 0 5116882 chr28
chr - gg30 30 0 1818525 chr30
chr - gg31 31 0 6153034 chr31
chr - gg32 32 0 725831 chr32
chr - gg33 33 0 7821666 chr33
chr - ggz Z 0 82529921 chry
#############################################
This is my circos config file.
# circos.conf
karyotype = /media/morpheus/sagar/kadak_part2/Gallus_gallus_karyotype.txt
<ideogram>
show_label = yes
label_with_tag = no
label_font = light
label_radius = dims(ideogram,radius_outer) + 0.05r
label_center = yes
label_size =30p
label_color = black
label_parallel = yes
<spacing>
default = 0.005r
</spacing>
radius = 0.9r
thickness = 80p
fill = yes
</ideogram>
###################################################################################################
<highlights>
z = 0
fill_color = green
<highlight>
file = genes.txt
r0 = 0.6r
r1 = 0.8r
</highlight>
<highlight>
file = genes.txt
r0 = 0.7r
r1 = 0.75r
z = 5
</highlight>
<highlight>
file = genes.txt
r0 = 1.1r
r1 = 1.15r
fill_color = blue
stroke_color = dblue
stroke_thickness = 2
</highlight>
</highlights>
################################################################
# The remaining content is standard and required. It is imported
# from default files in the Circos distribution.
#
# These should be present in every Circos configuration file and
# overridden as required. To see the content of these files,
# look in etc/ in the Circos distribution.
<image>
# Included from Circos distribution.
<<include /etc/circos/image.conf>>
</image>
# RGB/HSV color definitions, color lists, location of fonts, fill patterns.
# Included from Circos distribution.
<<include /etc/circos/colors_fonts_patterns.conf>>
# Debugging, I/O an dother system parameters
# Included from Circos distribution.
<<include /etc/circos/housekeeping.conf>>
<<include /etc/circos/tracks/highlight.bg.conf>>
######################################
This is error which I am getting
debuggroup summary 0.13s welcome to circos v0.69-8 15 Jun 2019 on Perl 5.030000
debuggroup summary 0.14s current working directory /media/morpheus/sagar/kadak_part2
debuggroup summary 0.14s command /usr/bin/circos -conf c.conf
debuggroup summary 0.14s loading configuration from file c.conf
debuggroup summary 0.14s found conf file c.conf
Can't use string ("0") as a HASH ref while "strict refs" in use at /usr/share/perl5/Circos/Configuration.pm line 547.