phylobayes on cipres

[Ligia Benavides]

Hello Mark,

Im trying to run PB on a small aa dataset and I get the attached error file

it seems to be a problem expanse?

thank you for any help,

Ligia

stderr.txt

Lmod has detected the following error: The following module(s) are unknown:
"slurm/expanse/23.02.6"

Please check the spelling or version number. Also try "module spider ..."
It is also possible your cache file is out-of-date; it may help to try:
  $ module --ignore-cache load "slurm/expanse/23.02.6"

Also make sure that all modulefiles written in TCL start with the string
#%Module

Executing this command requires loading "slurm/expanse/23.02.6" which failed
while processing the following module(s):

    Module fullname  Module Filename
    ---------------  ---------------
    phylobayes/1.8c  /expanse/projects/ngbt/opt/expanse/modules/phylobayes/1.8c


/usr/bin/which: no bpcomp in (/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/cipres/perl5/bin:/cm/shared/apps/spack/0.17.3/cpu/b/opt/spack/linux-rocky8-zen/gcc-8.5.0/subversion-1.14.0-qpzq6zs23mjmzgctlvkr2sjjzbhh44om/bin:/cm/shared/apps/sdsc/1.0/bin:/cm/shared/apps/sdsc/1.0/sbin:/home/cipres/miniconda3/bin:/home/cipres/miniconda3/condabin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/home/cipres/.local/bin:/home/cipres/bin:/home/cipres/ngbw/contrib/tools/bin)
srun: forcing job termination
srun: forcing job termination
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
srun: error: exp-1-25: tasks 0-22,25-35,37,39-40,43,45-46: Exited with exit code 2
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
slurmstepd: error: execve(): pb_mpi: No such file or directory
srun: error: exp-1-25: tasks 0-47: Exited with exit code 2
srun: error: exp-1-25: tasks 23-24,36,38,41-42,44,47: Exited with exit code 2
/home/cipres/ngbw/contrib/tools/bin/PBMultiRun_expanse.bash: line 1: warning: run_pending_traps: bad value in trap_list[17]: 0x5555555c38c0

[Mark Miller]

That is definitely an issue on our side.

We are working on it now.

Mark

[Mark Miller]

Hi there Ligia,

It should work now, let me know if you have a further issue.

Mark