Empty output file

Alesia Levanova

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Nov 26, 2024, 2:19:28 AM11/26/24

to CIPRES Science Gateway Users

Hi,

what could be the reason for an empty output file? Please, check the JOBINFO file below.

Task\ label=Mycoviral RdRp with outgroup Task\ ID=3165082 Tool=MAFFT_XSEDE created\ on=2024-11-25 06:24:42.0 JobHandle=NGBW-JOB-MAFFT_XSEDE-8FAA9945CBF2464DA6FEB26929D4F906 RunNumber=1 resource=expanse User\ ID=171215 User\ Name=alromano email=alesia....@helsinki.fi Output=(outputfile,output.mafft,UNKNOWN,UNKNOWN,UNKNOWN),(all_outputfiles,*,UNKNOWN,UNKNOWN,UNKNOWN) ChargeFactor=1.000000 cores=8 JOBID=35377363

Pfeiffer, Wayne

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Nov 26, 2024, 9:57:05 AM11/26/24

to Alesia Levanova, CIPRES Science Gateway Users, Pfeiffer, Wayne

Hi Alesia,

You have amino acid data but specified --nuc in your command line. Please remove that option, and your job will run :)

Best regards,

Wayne

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Alesia Levanova

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Nov 27, 2024, 1:42:20 AM11/27/24

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Everything works now. Thanks a lot for your help.

Best,
Alesia

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