Model Test in cipres

[Karen Salazar]

Dear, 

do you know how do the partition for modelTest to cipres?. 

I did following the instruction for ModelTest,  but results in Cipres say that cannot do the partition? 

Data_type= DNA/NT
Partition_name= Model_TEST_partition
Partition_sites
DNA, ATP6_1 = 1-666\3;
DNA, ATP6_2 = 2-666\3;
DNA, ATP6_3 = 3-666\3;
DNA, ATP8_1 = 667-834\3;
DNA, ATP8_2 = 668-834\3;
DNA, ATP8_3 = 669-834\3;
DNA, COI_1 = 835-1620\3;
DNA, COI_2 = 836-1620\3;
DNA, COI_3 = 837-1620\3;

modeltest-ng: Cannot parse partitions: partition.txt
             [910] Invalid datatype in partition 1: Data_type
Error: Invalid arguments

[Mark Miller]

Hi,

Can you please send me the file _jobinfo.txt for you failed job ?

You can send it to mmiller at sdsc.edu

Thanks,

Mark

[Karen Salazar]

Collègues,

Me and Mr M. Miller saw the mistake in my partition.  Only use this format for the partition (without heading in the beginning and not ; ) because Model_Test follow the RAxML format to the partition.