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Welcome CIPRES users. This forum is for sharing questions and issues in using the CIPRES resource.

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Jun 19

Globus Set up error

Hello Does anyone know why I am getting this error? × Error, unable to get access on the source

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Globus Set up error

Hello Does anyone know why I am getting this error? × Error, unable to get access on the source

Jun 19

Sergio Guillermo Pérez Consuegra, Mark Miller2

Jun 19

PartitionFinder

Hi there, Yes, sorry for the inconvenience. Rob Lanfear, the author of the code has merged the next

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PartitionFinder

Hi there, Yes, sorry for the inconvenience. Rob Lanfear, the author of the code has merged the next

Jun 19

Pooja Bishnoi, Pfeiffer, Wayne3

May 23

Service unavailable for CIPRES science gateway

Hi Pooja, CIPRES is working normally again. Best regards, Wayne Pfeiffer CIPRES Project Lead On May

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Service unavailable for CIPRES science gateway

Hi Pooja, CIPRES is working normally again. Best regards, Wayne Pfeiffer CIPRES Project Lead On May

May 23

May 21

CIPRES submissions are paused currently

We are experiencing some issues with the CIPRES database, so jobs are currently paused.

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CIPRES submissions are paused currently

We are experiencing some issues with the CIPRES database, so jobs are currently paused.

May 21

Pooja Bishnoi, … Mark Miller5

May 21

Service unavailable for CIPRES Science gateway

Hi, sorry it looks like there is an issue with the machine on our side. We received this message

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Service unavailable for CIPRES Science gateway

Hi, sorry it looks like there is an issue with the machine on our side. We received this message

May 21

Rashid Iqbal, Mark Miller2

May 20

Account registration problem on cipres portal

Hi there, Please help me understand what kind of issue you are having. Sincerely, Mark Miller On

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Account registration problem on cipres portal

Hi there, Please help me understand what kind of issue you are having. Sincerely, Mark Miller On

May 20

Stefan Dahl, Miller, Mark4

Apr 21

IQTree model testing by locus and first, second and third codon posiiton

Hi Stefan, I regret to say that this question is a bit out of my level of understanding of IQ Tree. I

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IQTree model testing by locus and first, second and third codon posiiton

Hi Stefan, I regret to say that this question is a bit out of my level of understanding of IQ Tree. I

Apr 21

Jeremiah Sia, Mark Miller3

Apr 20

EXIT CODE 1_MODELTEST NG ON XSEDE

Dear Mark, This is the contents of the file _JOBINFO.TXT. Thank you. Jeremiah Task\ label=

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EXIT CODE 1_MODELTEST NG ON XSEDE

Dear Mark, This is the contents of the file _JOBINFO.TXT. Thank you. Jeremiah Task\ label=

Apr 20

Mar 25

Unexpected memory limit?

Hi all, I recently ran an inference in IQ-TREE which quickly failed due to an out of memory error.

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Unexpected memory limit?

Hi all, I recently ran an inference in IQ-TREE which quickly failed due to an out of memory error.

Mar 25

Anaïs Beaumariage, … Walter Boeger4

Mar 25

Advice on alternatives to CIPRES for population structure analyses

Dear Mark and Cipres Team, Thank you very much for your detailed and helpful reply and also for the

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Advice on alternatives to CIPRES for population structure analyses

Dear Mark and Cipres Team, Thank you very much for your detailed and helpful reply and also for the

Mar 25

Feb 23

Request for CIPRES Infrastructure Code

Hello Mark, Can you please provide the CIPRES infrastructure code, I would like to set it up on my

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Request for CIPRES Infrastructure Code

Hello Mark, Can you please provide the CIPRES infrastructure code, I would like to set it up on my

Feb 23

Feb 20

CIPRES Infrastructure Code

Hello Mark, Can you please provide the CIPRES infrastructure code. I would like to set it up on my

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CIPRES Infrastructure Code

Hello Mark, Can you please provide the CIPRES infrastructure code. I would like to set it up on my

Feb 20

Jeremiah Sia, Pfeiffer, Wayne3

Feb 18

INQUIRY ON RAXML-NG CONSENSUS TREE OPTIONS

Dear Wayne, Good day. Understood and thank you for your explanation. Regards, Jeremiah On Wed, 18 Feb

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INQUIRY ON RAXML-NG CONSENSUS TREE OPTIONS

Dear Wayne, Good day. Understood and thank you for your explanation. Regards, Jeremiah On Wed, 18 Feb

Feb 18

Jan 30

Problems uploading data

I am unable to upload data. I have followed the tutorial instructions. When I try a direct upload

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Problems uploading data

I am unable to upload data. I have followed the tutorial instructions. When I try a direct upload

Jan 30

Jan 20

Globus giving an error after several successful transfers, any idea why?

Hi all, I get this error after having transferred several files successfully: "An error has

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Globus giving an error after several successful transfers, any idea why?

Hi all, I get this error after having transferred several files successfully: "An error has

Jan 20

David Cannatella

Jan 11

Subject: CIPRES REST API Internal Error - JsonMerge Hello, I'm getting an internal server error

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Subject: CIPRES REST API Internal Error - JsonMerge Hello, I'm getting an internal server error

Jan 11

David Cannatella

12/30/25

Globus downloads

I'm trying to download my files from CIPRES using Globus. After spending a couple of hours, I

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Globus downloads

I'm trying to download my files from CIPRES using Globus. After spending a couple of hours, I

12/30/25

인양, Mark Miller2

12/22/25

Request to Correct Email Address for Account Confirmation

I activated your account. Please login and correct the email address. Let me know if you have any

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Request to Correct Email Address for Account Confirmation

I activated your account. Please login and correct the email address. Let me know if you have any

12/22/25

12/22/25

I can not make a account.

I already resisterd shortly. But I mistaked on inserting address of emial. That is wrong address. So

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I can not make a account.

I already resisterd shortly. But I mistaked on inserting address of emial. That is wrong address. So

12/22/25

Joon Kim, … Mark Miller4

12/18/25

Possible way to purchase credit

Hi there, When you have an issue with a job, it is most helpful to send us the file _JOBINFO.TXT from

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Possible way to purchase credit

Hi there, When you have an issue with a job, it is most helpful to send us the file _JOBINFO.TXT from

12/18/25

10/27/25

ExaBayes not writing outputs?

Hello, I have an ExaBayes run that I started on 24 October. A 30 minute test run didn't show any

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ExaBayes not writing outputs?

Hello, I have an ExaBayes run that I started on 24 October. A 30 minute test run didn't show any

10/27/25

AMY PRICHARD, Mark Miller3

10/22/25

FastTree job completed but with no results

Hi Mark, Sorry, I don't have a google account associated with my health email I used to set up my

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FastTree job completed but with no results

Hi Mark, Sorry, I don't have a google account associated with my health email I used to set up my

10/22/25

10/1/25

New CIPRES feature to support data downloads

Dear CIPRES users, In view of CIPRES closure in a few months, we have added a new tool to facilitate

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New CIPRES feature to support data downloads

Dear CIPRES users, In view of CIPRES closure in a few months, we have added a new tool to facilitate

10/1/25

9/24/25

Subscription service to CIPRES ending 9/30/3025

Phoenix Bioinformatics will end its partnership with CIPRES as of September 30, 2025. As a result

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Subscription service to CIPRES ending 9/30/3025

Phoenix Bioinformatics will end its partnership with CIPRES as of September 30, 2025. As a result

9/24/25

Mahmut Şen, Mark Miller2

9/24/25

About membership issue

Thanks for reporting the issue, your account should be working now. SIncerely, Mark MIller On Monday,

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About membership issue

Thanks for reporting the issue, your account should be working now. SIncerely, Mark MIller On Monday,

9/24/25

Anaïs Beaumariage, … Pfeiffer, Wayne3

9/18/25

Job stuck in queue without intermediate results

Correction: The maintenance is scheduled for Monday, September 22. On Sep 18, 2025, at 9:24 AM, Mark

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Job stuck in queue without intermediate results

Correction: The maintenance is scheduled for Monday, September 22. On Sep 18, 2025, at 9:24 AM, Mark

9/18/25

Walter Boeger, Miller, Mark2

9/2/25

download API-REst job

I'm on the road right now with low connectivity. Please download a free trial of winzip and try

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download API-REst job

I'm on the road right now with low connectivity. Please download a free trial of winzip and try

9/2/25

Jeremy Miller, Mark Miller2

8/23/25

setting the ucldMean for multilocus analysis in Beast2

Hi Jeremy, Sorry I missed this inquiry. I would submit this question to beast users, you will likely

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setting the ucldMean for multilocus analysis in Beast2

Hi Jeremy, Sorry I missed this inquiry. I would submit this question to beast users, you will likely

8/23/25

saherba...@gmail.com, Miller, Mark2

7/30/25

unable to register account

Hi there, It looks like you have an account already: username = saherbatool55, email = saherbatool919

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unable to register account

Hi there, It looks like you have an account already: username = saherbatool55, email = saherbatool919

7/30/25

Jeremiah Sia, Miller, Mark9

7/22/25

Partition Homogeneity Test on PAUP

Awesome. Well done. From: Jeremiah Sia <jerem...@gmail.com> Sent: Monday, July 21, 2025 9:22

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Partition Homogeneity Test on PAUP

Awesome. Well done. From: Jeremiah Sia <jerem...@gmail.com> Sent: Monday, July 21, 2025 9:22

7/22/25

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