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1–30 of 321
Welcome CIPRES users. This forum is for sharing questions and issues in using the CIPRES resource.
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Ziv Lieberman
, …
Miller, Mark
10
Jun 16
Request: RevBayes v1.3; additional input files
Hi Ziv, Version 1.3 is released to production now. If you clone a job, you will want to select 1.3 as
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Request: RevBayes v1.3; additional input files
Hi Ziv, Version 1.3 is released to production now. If you clone a job, you will want to select 1.3 as
Jun 16
Caroline Obert
,
Mark Miller
2
Jun 11
HAlign4
Hi Caroline, thanks for the inquiry. We will investigate and get back to you on this shortly. Mark On
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HAlign4
Hi Caroline, thanks for the inquiry. We will investigate and get back to you on this shortly. Mark On
Jun 11
Uri Garcia
,
Mark Miller
5
May 19
Problem with Loading Large Alignment – Worked Before
Hi Mark, thanks for the reply. It seems my Wi-Fi connection was blocked in some way. I was able to
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Problem with Loading Large Alignment – Worked Before
Hi Mark, thanks for the reply. It seems my Wi-Fi connection was blocked in some way. I was able to
May 19
Sami
,
Pfeiffer, Wayne
3
Apr 24
Request to Update MSBD Package for BEAST 2 on CIPRES
Hi Wayne, Merci for your quick reply! My analysis works perfectly now, perfect ! Best, Sami Le jeudi
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Request to Update MSBD Package for BEAST 2 on CIPRES
Hi Wayne, Merci for your quick reply! My analysis works perfectly now, perfect ! Best, Sami Le jeudi
Apr 24
ALEJANDRO MARTÍNEZ NAVARRO
,
Miller, Mark
2
Apr 16
Issue with subscription - 1000 hours paid but not available
Sorry for the issue, I credited your account. Mark From: 'ALEJANDRO MARTÍNEZ NAVARRO' via
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Issue with subscription - 1000 hours paid but not available
Sorry for the issue, I credited your account. Mark From: 'ALEJANDRO MARTÍNEZ NAVARRO' via
Apr 16
Harshani Dilrukshika
,
Mark Miller
2
Apr 1
RAxML_info.result error message
Hi there, This looks like a pretty normal output file for a successful run. Can you tell me what
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RAxML_info.result error message
Hi there, This looks like a pretty normal output file for a successful run. Can you tell me what
Apr 1
Jeremiah Sia
, …
Miller, Mark
4
Mar 28
RAXML bootstrapping did not complete the 1,000 replicates as being setup
Dear Mark and Wayne, Thank you so much for your replies! It worked after adjusting the bootstrap
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RAXML bootstrapping did not complete the 1,000 replicates as being setup
Dear Mark and Wayne, Thank you so much for your replies! It worked after adjusting the bootstrap
Mar 28
José Ribeiro
3
Mar 8
discrete and continuous data
Hello again. I have subscribed to more 1000 hours, but I cannot see my new credit for hours. Would
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discrete and continuous data
Hello again. I have subscribed to more 1000 hours, but I cannot see my new credit for hours. Would
Mar 8
rekha unnikrishnan
,
Mark Miller
2
Feb 18
job results are missing
If files are missing from a job run, the run failed or did not complete for some reason. Here is a
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job results are missing
If files are missing from a job run, the run failed or did not complete for some reason. Here is a
Feb 18
Said Jimmy Nivelo Porozo
, …
Bruce Onisko
3
Feb 6
activation email
Hi Wayne, I also bought some time yesterday for when that's needed. Thanks again for your help.
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activation email
Hi Wayne, I also bought some time yesterday for when that's needed. Thanks again for your help.
Feb 6
Bruce Onisko
,
Pfeiffer, Wayne
2
Jan 26
need MCMCTree from PAML
Hi Bruce, Is there some reason that you cannot use BEAST or BEAST2? They are well maintained, are
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need MCMCTree from PAML
Hi Bruce, Is there some reason that you cannot use BEAST or BEAST2? They are well maintained, are
Jan 26
Ian Mundock
, …
M.sarwar M.sarwar
3
Jan 22
Acctivation email
No, I don't have any issue. I will start my work in coming 2-4 days. On Tue, Jan 21, 2025, 11:35
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Acctivation email
No, I don't have any issue. I will start my work in coming 2-4 days. On Tue, Jan 21, 2025, 11:35
Jan 22
XICHAVO ANDRONICA MATHEBULA
,
Pfeiffer, Wayne
2
Jan 8
Analysis not converging
Hi Xichavo, * Please send me the _JOBINFO.TXT file for one of your jobs that failed to converge.
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Analysis not converging
Hi Xichavo, * Please send me the _JOBINFO.TXT file for one of your jobs that failed to converge.
Jan 8
Jeremy Miller
Jan 7
Billing issue
Hi Cipres, I noticed what appers to be inconsistencies between my credit card bill and my purchase
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Billing issue
Hi Cipres, I noticed what appers to be inconsistencies between my credit card bill and my purchase
Jan 7
Ruwani Isanka
,
Pfeiffer, Wayne
2
Jan 2
Missing results
Hi Ruwani, Your job failed to run. The last line of the stdout.txt file is ERROR: Found 5 taxa that
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Missing results
Hi Ruwani, Your job failed to run. The last line of the stdout.txt file is ERROR: Found 5 taxa that
Jan 2
Tehseen Ilyas
,
Mark Miller
2
Jan 2
account access failure
Hello Tehseen, It looks like you created a REST account, and not a browser account. REST accounts are
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account access failure
Hello Tehseen, It looks like you created a REST account, and not a browser account. REST accounts are
Jan 2
Dilara Jayasekera
,
Pfeiffer, Wayne
4
12/29/24
Bipartition file missing from RAxML-HPC BlackBox analysis
Hi Dilara, The first error message in the stdout.txt file is ERROR: Taxon Name "GU300095.
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Bipartition file missing from RAxML-HPC BlackBox analysis
Hi Dilara, The first error message in the stdout.txt file is ERROR: Taxon Name "GU300095.
12/29/24
Leila Carmona
,
Mark Miller
4
12/13/24
Invoice
Hi Mark, My supervisor (Lucas Cervera) just purchased 10000 hours. We need an invoice like the
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Invoice
Hi Mark, My supervisor (Lucas Cervera) just purchased 10000 hours. We need an invoice like the
12/13/24
SEBASTIAN BURY TABARES
12/11/24
did not recive the email to active my account
Hello! I did´nt recive the email to active the account. Can you send me the email. Thanks!
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did not recive the email to active my account
Hello! I did´nt recive the email to active the account. Can you send me the email. Thanks!
12/11/24
LAURA KATHERINE TRULLO COMETA
, …
HUGO ANDRES GONZALEZ AMBUILA
7
12/11/24
Activation email
Hello. I have not received the activation email yet El martes, 19 de noviembre de 2024 a las 12:02:52
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Activation email
Hello. I have not received the activation email yet El martes, 19 de noviembre de 2024 a las 12:02:52
12/11/24
Natalie Finnegan
, …
Pfeiffer, Wayne
7
12/9/24
Issue with ParallelStructure
Hi Natalie, That's great! Thanks for letting us know that the code is working for you now :)
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Issue with ParallelStructure
Hi Natalie, That's great! Thanks for letting us know that the code is working for you now :)
12/9/24
Arunn Chettri
,
Pfeiffer, Wayne
2
12/5/24
Problem in running NCL Converter
Hi Arunn, The last line of your input fasta file is corrupted. Attached is a new file that works.
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Problem in running NCL Converter
Hi Arunn, The last line of your input fasta file is corrupted. Attached is a new file that works.
12/5/24
YU DENG
, …
Mark Miller
5
12/4/24
MrBayea issue
It should be possible to continue this job, if significant time was lost. Mark On Wednesday, December
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MrBayea issue
It should be possible to continue this job, if significant time was lost. Mark On Wednesday, December
12/4/24
YU DENG
, …
Pfeiffer, Wayne
6
12/1/24
MrBayea issue
Hi, MrBayes jobs are running on Popeye again :) Wayne On Nov 30, 2024, at 7:34 AM, Pfeiffer, Wayne
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MrBayea issue
Hi, MrBayes jobs are running on Popeye again :) Wayne On Nov 30, 2024, at 7:34 AM, Pfeiffer, Wayne
12/1/24
Jee-Young
,
Mark Miller
2
12/1/24
Help Needed with PhyloBayes MPI Analysis on CIPRES
Hi Jee-Young, Thanks for reporting the issue. I do not see any jobs in CIPRES associated with this
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Help Needed with PhyloBayes MPI Analysis on CIPRES
Hi Jee-Young, Thanks for reporting the issue. I do not see any jobs in CIPRES associated with this
12/1/24
Alesia Levanova
,
Pfeiffer, Wayne
3
11/27/24
Empty output file
Everything works now. Thanks a lot for your help. Best, Alesia On Tuesday, 26 November 2024 at 16:57:
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Empty output file
Everything works now. Thanks a lot for your help. Best, Alesia On Tuesday, 26 November 2024 at 16:57:
11/27/24
David Cannatella
,
Pfeiffer, Wayne
2
11/16/24
IQTREE2 issue
Hi Dave, There is no problem. Your job finished successfully in 25 seconds as you can see from output
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IQTREE2 issue
Hi Dave, There is no problem. Your job finished successfully in 25 seconds as you can see from output
11/16/24
Fabiola Sepulveda
, …
Miller, Mark
7
11/4/24
Why doesn't Phylobayes run?
Hi Mark, I understand what you are saying about the time used. I really appreciate your help, however
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Why doesn't Phylobayes run?
Hi Mark, I understand what you are saying about the time used. I really appreciate your help, however
11/4/24
Natalie Finnegan
,
Miller, Mark
4
10/29/24
MrBayes task getting stuck at seed command
Ah, ok. Can you send me the identifier for that job, and I will investigate? That would be very
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MrBayes task getting stuck at seed command
Ah, ok. Can you send me the identifier for that job, and I will investigate? That would be very
10/29/24
Vinicius Rocha
10/21/24
Issue - Registration
I'm from Brazilian Agricultural Research Corporation. Using a institucional e-mail (vinicius.
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Issue - Registration
I'm from Brazilian Agricultural Research Corporation. Using a institucional e-mail (vinicius.
10/21/24