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Welcome CIPRES users. This forum is for sharing questions and issues in using the CIPRES resource.
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Lorenzo Seneci
,
Mark Miller
4
Jul 25
MrBayes output files in Tracer
Hi Lorenzo, I had a little trouble accessing these files, when I downloaded the zip archive. WinZip
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MrBayes output files in Tracer
Hi Lorenzo, I had a little trouble accessing these files, when I downloaded the zip archive. WinZip
Jul 25
Mark Miller
Jul 25
Planned maintenance is complete. Service is restored.
Planned maintenance is complete. Service is restored. Please report any issues you see. SIncerely,
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Planned maintenance is complete. Service is restored.
Planned maintenance is complete. Service is restored. Please report any issues you see. SIncerely,
Jul 25
HATAIKARN KARNSRANG
,
Mark Miller
2
Jul 18
Activation emil
Hi there, Sometimes the activation email goes to spam or is blocked by local administrative policy. I
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Activation emil
Hi there, Sometimes the activation email goes to spam or is blocked by local administrative policy. I
Jul 18
Mark Miller
Jul 16
Planned maintenance Monday 7/24/2024 at 8 AM Pacific Time
The system will undergo planned maintenance Monday 7/24/2024 at 8 AM Pacific Time. All jobs will stop
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Planned maintenance Monday 7/24/2024 at 8 AM Pacific Time
The system will undergo planned maintenance Monday 7/24/2024 at 8 AM Pacific Time. All jobs will stop
Jul 16
Alejandra Piedra N��ez
, …
Miller, Mark
12
Jul 5
Activation email
I activated the account, so you don't need the email. From: cipres-science-gateway-users@
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Activation email
I activated the account, so you don't need the email. From: cipres-science-gateway-users@
Jul 5
Vitor Renan
,
Mark Miller
2
Jul 3
Authentication error
Hi Vitor, Thanks for reporting the issue, I have fixed it. Please try again using the same email
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Authentication error
Hi Vitor, Thanks for reporting the issue, I have fixed it. Please try again using the same email
Jul 3
Dave Id
, …
Miller, Mark
11
Jun 6
Generate MrBayes block from IQ-TREE
I can read the issue, and gave ti thumbs up, and subscribed to it. Thanks for detailing the issue so
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Generate MrBayes block from IQ-TREE
I can read the issue, and gave ti thumbs up, and subscribed to it. Thanks for detailing the issue so
Jun 6
Marija Gardijan
,
Mark Miller
2
May 24
Having troubles with my activation e mail
Hi Marija, I have activated your account. Sometimes the activation mails get blocked by local
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Having troubles with my activation e mail
Hi Marija, I have activated your account. Sometimes the activation mails get blocked by local
May 24
Emma Wang
,
Mark Miller
2
May 21
Questions about combining log files and trees files on Logcombiner
Hi Emma, I can't find a user with your email account. Can you please send me the username on your
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Questions about combining log files and trees files on Logcombiner
Hi Emma, I can't find a user with your email account. Can you please send me the username on your
May 21
Ricardo Miranda Morelli
,
Mark Miller
2
May 20
Activation e-mail
Hi Ricardo, I have activated your account. Sometimes the local policies prevent the activation email
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Activation e-mail
Hi Ricardo, I have activated your account. Sometimes the local policies prevent the activation email
May 20
Mario Alberto Hern�ndez Aguilando
May 17
CIPRES ACCOUNT
Hi, I created an account for CIPRES portal but I didn't receive the activation email. Any help --
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CIPRES ACCOUNT
Hi, I created an account for CIPRES portal but I didn't receive the activation email. Any help --
May 17
Allan Sampao
,
Mark Miller
2
May 11
Produce gene trees in IQ-TREE?
Hi Allan, Thanks for the question. The simple answer is, I can make it possible for you to create any
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Produce gene trees in IQ-TREE?
Hi Allan, Thanks for the question. The simple answer is, I can make it possible for you to create any
May 11
Dhananjay
,
Mark Miller
2
May 10
Unable to access CIPRES science gateway
Hi there, Thanks for reporting the issue. It looks like you registered in both places. But the portal
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Unable to access CIPRES science gateway
Hi there, Thanks for reporting the issue. It looks like you registered in both places. But the portal
May 10
Giuseppe Emanuele De Pasquale
,
Mark Miller
2
May 9
Slowness of MrBayes due to partitioning or missing Nexus block parameters?
Hi all, my colleague, Wayne Pfeiffer, manages efficiency here at CIPRES. He has this response: Hi
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Slowness of MrBayes due to partitioning or missing Nexus block parameters?
Hi all, my colleague, Wayne Pfeiffer, manages efficiency here at CIPRES. He has this response: Hi
May 9
Allan Sampao
,
Mark Miller
2
May 6
Activation email
Hi Allan, Sometimes the activation message gets blocked by your local administrative policies. It
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Activation email
Hi Allan, Sometimes the activation message gets blocked by your local administrative policies. It
May 6
Ziv Lieberman
,
Mark Miller
4
May 2
IQ-TREE: Merge partitions only?
The patch is in place now, so by default, bootstrapping is not selected. On Thursday, May 2, 2024 at
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IQ-TREE: Merge partitions only?
The patch is in place now, so by default, bootstrapping is not selected. On Thursday, May 2, 2024 at
May 2
yue meng
,
Mark Miller
2
Apr 18
There is no confirmation option in the registration confirmation email, how can I verify it?
Hi there, It looks like you didnt receive the activation email. Sometimes it gets caught in a spam
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There is no confirmation option in the registration confirmation email, how can I verify it?
Hi there, It looks like you didnt receive the activation email. Sometimes it gets caught in a spam
Apr 18
D Redding
,
Mark Miller
2
Mar 15
Problem with CIPRES subscription
Hi Dave, Thanks for reporting the issue. Credit should appear instantly in the interface, so there
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Problem with CIPRES subscription
Hi Dave, Thanks for reporting the issue. Credit should appear instantly in the interface, so there
Mar 15
Mario Sandoval
,
Mark Miller
5
Mar 13
Unable to upload files to CIPRES endpoint - Globus Transfer
Dear Mario, We investigated this issue on our side. We found that activating the endpoint is key.
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Unable to upload files to CIPRES endpoint - Globus Transfer
Dear Mario, We investigated this issue on our side. We found that activating the endpoint is key.
Mar 13
Harilaos Lessios
,
Mark Miller
3
Feb 29
Problem with IMa3
Just a quick update: this issue is resolved, and the requested feature works. Mark On Tuesday,
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Problem with IMa3
Just a quick update: this issue is resolved, and the requested feature works. Mark On Tuesday,
Feb 29
Ligia Benavides
,
Mark Miller
3
Feb 26
phylobayes on cipres
Hi there Ligia, It should work now, let me know if you have a further issue. Mark On Monday, February
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phylobayes on cipres
Hi there Ligia, It should work now, let me know if you have a further issue. Mark On Monday, February
Feb 26
Rodolfo Probst
,
Mark Miller
4
Feb 23
Issues with IQ-Tree Run
Thanks for letting me know Rodolfo. I understand about the free tier and time issue; you found a good
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Issues with IQ-Tree Run
Thanks for letting me know Rodolfo. I understand about the free tier and time issue; you found a good
Feb 23
prabodh bajpai
,
Mark Miller
2
Feb 19
Identifying correct output in MAFFT alignment
Hi Prabodh, Thanks for the inquiry. progress.mafft should give you information about the progress of
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Identifying correct output in MAFFT alignment
Hi Prabodh, Thanks for the inquiry. progress.mafft should give you information about the progress of
Feb 19
周亚彬
,
Mark Miller
2
Feb 8
Data queued issue
Hi there, I sincerely apologize for this issue. In both cases a user (two different users) uploaded
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Data queued issue
Hi there, I sincerely apologize for this issue. In both cases a user (two different users) uploaded
Feb 8
Mark Miller
Feb 5
upcoming maintenance: jobs will be held
Dear Users, On Monday 2/12, there will be a maintenance that kills running jobs. The maintenance will
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upcoming maintenance: jobs will be held
Dear Users, On Monday 2/12, there will be a maintenance that kills running jobs. The maintenance will
Feb 5
Celeste Mouth
,
Mark Miller
2
Feb 1
Data queued for 3 days
Hi Celeste, Thanks for reporting the issue. Unfortunately one user uploaded 20000 files all at once
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Data queued for 3 days
Hi Celeste, Thanks for reporting the issue. Unfortunately one user uploaded 20000 files all at once
Feb 1
Aimee Caye Chang
,
Mark Miller
4
Jan 29
Missing file on Mr. Bayes
Awesome, thanks for letting me know. Probably it eas a node failure or something like that that
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Missing file on Mr. Bayes
Awesome, thanks for letting me know. Probably it eas a node failure or something like that that
Jan 29
Aimee Caye Chang
Jan 27
Mr. Bayes problem
Hi, I am having problems running Mr. Bayes today. Below was the first attempt that said the run was
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Mr. Bayes problem
Hi, I am having problems running Mr. Bayes today. Below was the first attempt that said the run was
Jan 27
Mattia Ragazzini
,
Mark Miller
2
Jan 26
MrByes on XSEDE stops likely for input error
Hi Mattia, A couple of things: I found no CIPRES account associated with the email address you sent
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MrByes on XSEDE stops likely for input error
Hi Mattia, A couple of things: I found no CIPRES account associated with the email address you sent
Jan 26
jhorn
,
Mark Miller
2
Jan 25
MrBayes on XSEDE repeatedly stoping after 331000 generations
Hi Jay, Your runs stopped because they reached the configured stoprun value: In the parameters, it
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MrBayes on XSEDE repeatedly stoping after 331000 generations
Hi Jay, Your runs stopped because they reached the configured stoprun value: In the parameters, it
Jan 25