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1–30 of 337
Welcome CIPRES users. This forum is for sharing questions and issues in using the CIPRES resource.
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David Cannatella
12/30/25
Globus downloads
I'm trying to download my files from CIPRES using Globus. After spending a couple of hours, I
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Globus downloads
I'm trying to download my files from CIPRES using Globus. After spending a couple of hours, I
12/30/25
인양
,
Mark Miller
2
12/22/25
Request to Correct Email Address for Account Confirmation
I activated your account. Please login and correct the email address. Let me know if you have any
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Request to Correct Email Address for Account Confirmation
I activated your account. Please login and correct the email address. Let me know if you have any
12/22/25
인양
12/22/25
I can not make a account.
I already resisterd shortly. But I mistaked on inserting address of emial. That is wrong address. So
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I can not make a account.
I already resisterd shortly. But I mistaked on inserting address of emial. That is wrong address. So
12/22/25
Joon Kim
, …
Mark Miller
4
12/18/25
Possible way to purchase credit
Hi there, When you have an issue with a job, it is most helpful to send us the file _JOBINFO.TXT from
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Possible way to purchase credit
Hi there, When you have an issue with a job, it is most helpful to send us the file _JOBINFO.TXT from
12/18/25
Ziv Lieberman
10/27/25
ExaBayes not writing outputs?
Hello, I have an ExaBayes run that I started on 24 October. A 30 minute test run didn't show any
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ExaBayes not writing outputs?
Hello, I have an ExaBayes run that I started on 24 October. A 30 minute test run didn't show any
10/27/25
AMY PRICHARD
,
Mark Miller
3
10/22/25
FastTree job completed but with no results
Hi Mark, Sorry, I don't have a google account associated with my health email I used to set up my
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FastTree job completed but with no results
Hi Mark, Sorry, I don't have a google account associated with my health email I used to set up my
10/22/25
Mark Miller
10/1/25
New CIPRES feature to support data downloads
Dear CIPRES users, In view of CIPRES closure in a few months, we have added a new tool to facilitate
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New CIPRES feature to support data downloads
Dear CIPRES users, In view of CIPRES closure in a few months, we have added a new tool to facilitate
10/1/25
Mark Miller
9/24/25
Subscription service to CIPRES ending 9/30/3025
Phoenix Bioinformatics will end its partnership with CIPRES as of September 30, 2025. As a result
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Subscription service to CIPRES ending 9/30/3025
Phoenix Bioinformatics will end its partnership with CIPRES as of September 30, 2025. As a result
9/24/25
Mahmut Şen
,
Mark Miller
2
9/24/25
About membership issue
Thanks for reporting the issue, your account should be working now. SIncerely, Mark MIller On Monday,
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About membership issue
Thanks for reporting the issue, your account should be working now. SIncerely, Mark MIller On Monday,
9/24/25
Anaïs Beaumariage
, …
Pfeiffer, Wayne
3
9/18/25
Job stuck in queue without intermediate results
Correction: The maintenance is scheduled for Monday, September 22. On Sep 18, 2025, at 9:24 AM, Mark
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Job stuck in queue without intermediate results
Correction: The maintenance is scheduled for Monday, September 22. On Sep 18, 2025, at 9:24 AM, Mark
9/18/25
Walter Boeger
,
Miller, Mark
2
9/2/25
download API-REst job
I'm on the road right now with low connectivity. Please download a free trial of winzip and try
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download API-REst job
I'm on the road right now with low connectivity. Please download a free trial of winzip and try
9/2/25
Jeremy Miller
,
Mark Miller
2
8/23/25
setting the ucldMean for multilocus analysis in Beast2
Hi Jeremy, Sorry I missed this inquiry. I would submit this question to beast users, you will likely
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setting the ucldMean for multilocus analysis in Beast2
Hi Jeremy, Sorry I missed this inquiry. I would submit this question to beast users, you will likely
8/23/25
saherba...@gmail.com
,
Miller, Mark
2
7/30/25
unable to register account
Hi there, It looks like you have an account already: username = saherbatool55, email = saherbatool919
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unable to register account
Hi there, It looks like you have an account already: username = saherbatool55, email = saherbatool919
7/30/25
Jeremiah Sia
,
Miller, Mark
9
7/22/25
Partition Homogeneity Test on PAUP
Awesome. Well done. From: Jeremiah Sia <jerem...@gmail.com> Sent: Monday, July 21, 2025 9:22
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Partition Homogeneity Test on PAUP
Awesome. Well done. From: Jeremiah Sia <jerem...@gmail.com> Sent: Monday, July 21, 2025 9:22
7/22/25
曾城
,
Mark Miller
2
7/21/25
Unable to select data
Hi there, Thanks for reporting the issue. The select data feature is working ok in my interface. I
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Unable to select data
Hi there, Thanks for reporting the issue. The select data feature is working ok in my interface. I
7/21/25
Mark Miller
7/17/25
Emergency maintenance on Expanse 7/17/2025
The Expanse machine, which runs all codes except MrBayes, is currently under emergency maintenance.
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Emergency maintenance on Expanse 7/17/2025
The Expanse machine, which runs all codes except MrBayes, is currently under emergency maintenance.
7/17/25
Ziv Lieberman
, …
Miller, Mark
10
6/16/25
Request: RevBayes v1.3; additional input files
Hi Ziv, Version 1.3 is released to production now. If you clone a job, you will want to select 1.3 as
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Request: RevBayes v1.3; additional input files
Hi Ziv, Version 1.3 is released to production now. If you clone a job, you will want to select 1.3 as
6/16/25
Caroline Obert
,
Mark Miller
2
6/11/25
HAlign4
Hi Caroline, thanks for the inquiry. We will investigate and get back to you on this shortly. Mark On
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HAlign4
Hi Caroline, thanks for the inquiry. We will investigate and get back to you on this shortly. Mark On
6/11/25
Uri Garcia
,
Mark Miller
5
5/19/25
Problem with Loading Large Alignment – Worked Before
Hi Mark, thanks for the reply. It seems my Wi-Fi connection was blocked in some way. I was able to
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Problem with Loading Large Alignment – Worked Before
Hi Mark, thanks for the reply. It seems my Wi-Fi connection was blocked in some way. I was able to
5/19/25
Sami
,
Pfeiffer, Wayne
3
4/24/25
Request to Update MSBD Package for BEAST 2 on CIPRES
Hi Wayne, Merci for your quick reply! My analysis works perfectly now, perfect ! Best, Sami Le jeudi
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Request to Update MSBD Package for BEAST 2 on CIPRES
Hi Wayne, Merci for your quick reply! My analysis works perfectly now, perfect ! Best, Sami Le jeudi
4/24/25
ALEJANDRO MARTÍNEZ NAVARRO
,
Miller, Mark
2
4/16/25
Issue with subscription - 1000 hours paid but not available
Sorry for the issue, I credited your account. Mark From: 'ALEJANDRO MARTÍNEZ NAVARRO' via
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Issue with subscription - 1000 hours paid but not available
Sorry for the issue, I credited your account. Mark From: 'ALEJANDRO MARTÍNEZ NAVARRO' via
4/16/25
Harshani Dilrukshika
,
Mark Miller
2
4/1/25
RAxML_info.result error message
Hi there, This looks like a pretty normal output file for a successful run. Can you tell me what
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RAxML_info.result error message
Hi there, This looks like a pretty normal output file for a successful run. Can you tell me what
4/1/25
Jeremiah Sia
, …
Miller, Mark
4
3/28/25
RAXML bootstrapping did not complete the 1,000 replicates as being setup
Dear Mark and Wayne, Thank you so much for your replies! It worked after adjusting the bootstrap
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RAXML bootstrapping did not complete the 1,000 replicates as being setup
Dear Mark and Wayne, Thank you so much for your replies! It worked after adjusting the bootstrap
3/28/25
José Ribeiro
3
3/8/25
discrete and continuous data
Hello again. I have subscribed to more 1000 hours, but I cannot see my new credit for hours. Would
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discrete and continuous data
Hello again. I have subscribed to more 1000 hours, but I cannot see my new credit for hours. Would
3/8/25
rekha unnikrishnan
,
Mark Miller
2
2/18/25
job results are missing
If files are missing from a job run, the run failed or did not complete for some reason. Here is a
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job results are missing
If files are missing from a job run, the run failed or did not complete for some reason. Here is a
2/18/25
Said Jimmy Nivelo Porozo
, …
Bruce Onisko
3
2/6/25
activation email
Hi Wayne, I also bought some time yesterday for when that's needed. Thanks again for your help.
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activation email
Hi Wayne, I also bought some time yesterday for when that's needed. Thanks again for your help.
2/6/25
Bruce Onisko
,
Pfeiffer, Wayne
2
1/26/25
need MCMCTree from PAML
Hi Bruce, Is there some reason that you cannot use BEAST or BEAST2? They are well maintained, are
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need MCMCTree from PAML
Hi Bruce, Is there some reason that you cannot use BEAST or BEAST2? They are well maintained, are
1/26/25
Ian Mundock
, …
M.sarwar M.sarwar
3
1/22/25
Acctivation email
No, I don't have any issue. I will start my work in coming 2-4 days. On Tue, Jan 21, 2025, 11:35
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Acctivation email
No, I don't have any issue. I will start my work in coming 2-4 days. On Tue, Jan 21, 2025, 11:35
1/22/25
XICHAVO ANDRONICA MATHEBULA
,
Pfeiffer, Wayne
2
1/8/25
Analysis not converging
Hi Xichavo, * Please send me the _JOBINFO.TXT file for one of your jobs that failed to converge.
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Analysis not converging
Hi Xichavo, * Please send me the _JOBINFO.TXT file for one of your jobs that failed to converge.
1/8/25
Jeremy Miller
1/7/25
Billing issue
Hi Cipres, I noticed what appers to be inconsistencies between my credit card bill and my purchase
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Billing issue
Hi Cipres, I noticed what appers to be inconsistencies between my credit card bill and my purchase
1/7/25