Mark,I make perry regularly from Thorn pears,and usually do not wait for them to go brown inside.However,you may get away with it without too many problems,if you use a reasonable amount of sulphite.
Andrew Lea recommends significantly more sulphite for perry pears than for apples,and with the condition of your pears,I suggest you do not use a reduced sulphite wild fermentation,but would add the full amount of sulphite recommended by Andrew( depending on pH) plus another 50-75ppm.Then leave for a couple of days and put in a yeast of your choice.
If you search this group for perry making you may find some old discussions on this point.
Michael