issue regarding loading 10x data

[Maira Sajjad]

Hi, 

I want to load 10X scATAC-seq data ( matrix.mtx, features.tsv, and barcode.tsv) to cicero to calculate co-accessibility. 

I am following this link: https://cole-trapnell-lab.github.io/cicero-release/docs/#loading-10x-scatac-seq-data , but I have this errors that say the dimnames are not equal for peakinfo and indata.

I am using atack_peaks.bed file from outs for peak info and matrix.mtx.gr from filtered_feature_bc_matrix

Thanks!

[hpl...@gmail.com]

Hello,

Can you confirm the dimensions of the two objects? I.e. provide the head and dims of indata and peakinfo?

Best,

Hannah