script: output_genomic_regions_from_calls.pl

[yif...@gmail.com]

Can anybody tell me where I can get the script named:
output_genomic_regions_from_calls.pl ?
I could not find it in the QuEST package.
Thanks a lot!
YT

[Anton]

Here: http://www-hsc.usc.edu/~valouev/QuEST/MEME_analysis_of_GABP.html

this

[Albireo]

Hi Anton,

I have a question about option -i QuEST_calls_file. What format is the quest call file in? Simple bed hopefully? I'd like to use the script with a set of intervals in .bed format obtained as an output of MACS. Is this possible? Thanks

[Anton Valouev]

There is a bed file for the peak positions and another bed file for the region positions. See the tutorial.

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