dimensionality extent quality?

[Egon Willighagen]

Hi all,

I am looking at the ontology for a ongoing project here on KI around
toxicology, and into converting the BODO to be based on CHEMINF.

This resulted in these two questions/ideas about 'dimensionality
extent quality'.

- can we move this one level up, as not just 'molecular entity's have
such quality?
- how can we extend the current entries to cover ranges and/or
distributions? e.g. for polymers?

The latter could be done with 'length range' or 'radius range', etc...
then a single 'length' is basically just a more specialized version of
it... (where the standard deviation is 0)...

Ideas, comments?

Egon

--
Dr E.L. Willighagen
Postdoctoral Researcher
Institutet för miljömedicin
Karolinska Institutet (http://ki.se/imm)
Homepage: http://egonw.github.com/
LinkedIn: http://se.linkedin.com/in/egonw
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers

[Michel Dumontier]

On Sun, Oct 9, 2011 at 7:43 AM, Egon Willighagen <egon.wil...@gmail.com> wrote:

Hi all,

I am looking at the ontology for a ongoing project here on KI around
toxicology, and into converting the BODO to be based on CHEMINF.

This resulted in these two questions/ideas about 'dimensionality
extent quality'.

- can we move this one level up, as not just 'molecular entity's have
such quality?

done.

 

- how can we extend the current entries to cover ranges and/or
distributions? e.g.' for polymers?

for any given measurement of a quality, you can capture the exact measured value, or a value range with the 'has value' datatype property.

e.g.

'measurement value'

'is quality measurement of' some 'length'

and 'has value' some int[>= 5, <=75]

m.

 

The latter could be done with 'length range' or 'radius range', etc...
then a single 'length' is basically just a more specialized version of
it... (where the standard deviation is 0)...

Ideas, comments?

Egon


--
Dr E.L. Willighagen
Postdoctoral Researcher
Institutet för miljömedicin
Karolinska Institutet (http://ki.se/imm)
Homepage: http://egonw.github.com/
LinkedIn: http://se.linkedin.com/in/egonw
Blog: http://chem-bla-ics.blogspot.com/
PubList: http://www.citeulike.org/user/egonw/tag/papers

--
Michel Dumontier
Associate Professor of Bioinformatics
Carleton University
http://dumontierlab.com