crash when loading plan

[Ming]

Hi,

I would greatly appreciate it if anyone can help me with the crash when loading a plan to CERR. It does not crash for every case but

it does occasionally, meaning the specific plans could have issues (like RT Struct)? I am using MATLAB 2016a and CERR v5.2 25-Jan-2017.

The error looks like the following. Thanks,

Ming

 Reading header ... 

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.sponsorID field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.protocolID field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.subjectID field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.submissionID field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.timeSaved field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.lastSavedInVer field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.CERRImportVersion field, leaving empty.

CERR>>  DICOM Import has no methods defined for import into the planC{indexS.header}.anonymizedID field, leaving empty.

 Reading comment ... 

 Reading scan ... 

 Reading structures ... 

 Reading structureArray ... 

 Reading structureArrayMore ... 

 Reading beams ... 

 Reading beamGeometry ... 

 Reading dose ... 

 Reading DVH ... 

Too many outputs requested.  Most likely cause is missing [] around left hand side that has a comma

separated list expansion.

Error in populate_planC_field (line 370)

                                dataS(dvhsAdded+1).structureName = structureNameC{indROINumber};

Error in dcmdir2planC (line 48)

    cellData = populate_planC_field(cellNames{i}, dcmdir_PATIENT);

Error in CERRImportDCM4CHE (line 133)

    planC = dcmdir2planC(combinedDcmdirS);

Error in CERR (line 138)

                    CERRImportDCM4CHE; 

Error while evaluating UIControl Callback

[ap...@mskcc.org]

Ming - can you try updating to the latest from github?

Thanks,

Aditya

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[Ming]

Hi Aditya,

I tried to install with github, but kept having trouble. Something like this:

g...@github.com: Permission denied (publickey). fatal: Could not read from remote repository.

I remember the installing CERR used to be very simple. Just downloaded the master folder and imported into MATLAB. Is it still possible to do that with recent MATLAB versions?

Thanks,

Ming

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[Ming]

Hi Aditya,

I downloaded the CERR master folder but encountered problems when installing CERR. I followed your steps listed in https://github.com/cerr/CERR/wiki/Compiled-version-of-CERR.

However, when loading CERR.m into the Application Compiler, I did not see many files under "Files required for your application to run" except CERR.png there. 

Anything I did wrong? Thanks,

Ming

[Ming]

Aditya-

Yes, with the latest version the errors did not show up. And the newer version seems faster as well. Thanks,

Ming

On Friday, December 6, 2019 at 3:40:14 PM UTC-5, ap...@mskcc.org wrote:

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[ap...@mskcc.org]

Thanks Ming for your feedback. I just pushed few more updates to GitHub for speedup and windowing. Please try out.

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[Ming]

Aditya-

I haven't had a chance to test the latest version, but with the one I used a couple of weeks ago, I always had the following errors whenever I tried to check DVH. And sometimes the DVHs are completely wrong.

You might need to take a look at what happened. The error message is typically shown below. Thanks,

Ming

Warning: 'Location' interpreted as a legend property name.  To include a label with the same name as a legend property, specify the

labels using a cell array or string array. 

Error using legend (line 261)

Unknown property 'Chiasm (PLAN--GY)'

Error in plotDVH (line 225)

            legend(hAxis,'Location', 'NorthEastOutside', legend_string);%adds legend to DVH plot

Error in showDVHGui (line 566)

        plotDVH(ud.state.surf, ud.state.vol, ud.state.avg, ud.state.abs, ud.af.newPlot, ud.af.grid, ud.af.stdavgDVH,

        cum_diff_string); 

Error while evaluating UIControl Callback.

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[ap...@mskcc.org]

Hi Ming,

 

Thanks for pointing it out. Selecting multiple DVHs caused “legend” to crash. This was caused due to change in behavior of MATLAB’s legend function with newer releases. I have fixed this with the latest github update. Please try out.

 

Thanks,

Aditya

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[Ming Chao]

Hi Aditya,

The latest github update fixed the DVH error. By the way, I am using MATLAB 2018b. Thanks!

Ming

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