Hi Atul,
Yes, you can import the individual datasets into CERR format (i.e. create two .mat files). Then, load one of them in CERR, followed by merging the other. Here is a brief note about the workflow:
http://radium.wustl.edu/wiki/index.php/Merging_two_CERR_plan_archives
Regards,
Aditya
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