is there a way to auto-contour lungs

[Ming]

Hi,

Is there a way to auto-contour lungs which seems pretty easy to implement. I tried to use manual contouring --> threshold but could not figure out how to use it properly. Can anyone help me out?

Thank you.

Ming

[Aditya Apte]

There is a CNN model available to run from CERR that segments lungs, esophagus, spinal cord, heart and proximal bronchial tree. Here is a link to a demo notebook runnable on Google Colab with sample data from IDC.

https://github.com/stratis-forge/segmentation-workflows/blob/main/demo_DLseg_LungOAR_on_IDC_dataset.ipynb

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[Ming]

Looks fancy. I will try it out and report results later. Thank you Aditya.

Ming