loading .mat file from command line

[Arka]

Hi

Does anyone know how to load a *.mat.bz2 archive from command line,
without using the GUI?

Thanks,

Arka Roy

[Scott Hadley]

Hi,

There is a script for decompressing the bz2 file. All it does is call
a command line tool to do the decompression and save the file to the
disk. Then you load that .mat file.

HTH,
Scott

[ap...@mskcc.org]

Here is a code sample to do this:

planC = loadPlanC(cerrFileName,tempdir);
planC = updatePlanFields(planC);
indexS = planC{end};

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[Arka Roy]

Thanks a lot for the help guys. Appreciate it. 

Arka

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[Arka Roy]

Aditya, 

Unless I keep the CERR GUI window open, I get the following error when I try to re-run IMRT dose calculations.

??? Attempt to reference field of non-structure array.

Error in ==> MLVersion at 23

version = stateS.MLVersion;

Error in ==> updateStructureMatrices>uniformAdd at 277

if MLVersion < 6.5

Error in ==> updateStructureMatrices at 229

        planC = uniformAdd(structM, scanNum, sliceNumsV,

        relStructNum, planC);

Error in ==> robust at 324

                    planC = updateStructureMatrices(planC,

                    posi);

It's only when the GUI remains open, the IMRT dose calculations run fine. Any idea why?

Thanks, 

Arka