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, …
Iyer, Aditi
5
4/12/24
auto contour of external (body)
Yes, you can use getPatientOutline. Please see our wiki entry https://github.com/cerr/CERR/wiki/
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auto contour of external (body)
Yes, you can use getPatientOutline. Please see our wiki entry https://github.com/cerr/CERR/wiki/
4/12/24
Ming
3/6/24
error when loading dicom files
Hi, I had reported the error when loading dicom files back in 2019 https://groups.google.com/g/cerr-
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error when loading dicom files
Hi, I had reported the error when loading dicom files back in 2019 https://groups.google.com/g/cerr-
3/6/24
Ming
9/8/23
dose set not found
Hi, I encountered a similar problem reported back in 2016 (no real solution though): https://groups.
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dose set not found
Hi, I encountered a similar problem reported back in 2016 (no real solution though): https://groups.
9/8/23
Ming
,
Aditya Apte
3
6/14/23
is there a way to auto-contour lungs
Looks fancy. I will try it out and report results later. Thank you Aditya. Ming On Tuesday, June 13,
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is there a way to auto-contour lungs
Looks fancy. I will try it out and report results later. Thank you Aditya. Ming On Tuesday, June 13,
6/14/23
Ming
2/22/23
loadPlanC for .bz2 files
Hi, When I tried to load a xxx.mat.bz2 CERR file using the command loadPlanC: planC = loadPlanC(
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loadPlanC for .bz2 files
Hi, When I tried to load a xxx.mat.bz2 CERR file using the command loadPlanC: planC = loadPlanC(
2/22/23
Bryce
,
ap...@mskcc.org
2
12/16/21
Feature extraction from single CT slice
Here is sample code to extract radiomics from the central axial slice. Please pull the latest updates
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Feature extraction from single CT slice
Here is sample code to extract radiomics from the central axial slice. Please pull the latest updates
12/16/21
m.86.m...@gmail.com
3/4/21
Data for intensity modulated radiation therapy (IMRT)
Hello, I am asking for possibility of having access to Dose-influence matrix separately for OARs and
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Data for intensity modulated radiation therapy (IMRT)
Hello, I am asking for possibility of having access to Dose-influence matrix separately for OARs and
3/4/21
P Mcg
,
Aditya Apte
2
3/2/21
Issue with Gamma3D function
Hi P, I see a couple of issues: 1> dicomeread(doseFile) will not produce dose in Gy.
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Issue with Gamma3D function
Hi P, I see a couple of issues: 1> dicomeread(doseFile) will not produce dose in Gy.
3/2/21
Dominic Rafferty
, …
JO
6
2/24/21
Importing 3ddose
Great! Do you have any comments to those differences I have indicated in my previous post? BR, JO
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Importing 3ddose
Great! Do you have any comments to those differences I have indicated in my previous post? BR, JO
2/24/21
farzin....@gmail.com
,
ap...@mskcc.org
3
12/25/20
Samples Datasets Not Available
Thank you very much. I probably should not ask this here, but I was wondering if the DVH module in
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Samples Datasets Not Available
Thank you very much. I probably should not ask this here, but I was wondering if the DVH module in
12/25/20
Dominic Rafferty
, …
ap...@mskcc.org
3
10/6/20
Importing to Eclipse after DICOM export from CERR
Can you try setting the following option in CERROptions.json retainOriginalUIDonExport : “no” From:
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Importing to Eclipse after DICOM export from CERR
Can you try setting the following option in CERROptions.json retainOriginalUIDonExport : “no” From:
10/6/20
Dominic Rafferty
, …
iy...@mskcc.org
8
9/28/20
Export modified DICOM image set
Hi Dominic, Thanks for pointing this out. The CT offset should be subtracted before assigning new
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Export modified DICOM image set
Hi Dominic, Thanks for pointing this out. The CT offset should be subtracted before assigning new
9/28/20
nuria.fran...@gmail.com
8/23/20
problems with the "show IM dose in CERR" module
Hello everyone, I am having problems with the dose distribution planner that I could reproduce in a
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problems with the "show IM dose in CERR" module
Hello everyone, I am having problems with the dose distribution planner that I could reproduce in a
8/23/20
Miss Chatti
,
ap...@mskcc.org
3
8/8/20
Image registration - finding co-ordinates
Hi, Thank you for your help. I'm not sure if I should be using GUI as it says: http://isbweb.org/
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Image registration - finding co-ordinates
Hi, Thank you for your help. I'm not sure if I should be using GUI as it says: http://isbweb.org/
8/8/20
Isong Ernest
6/26/20
Vx Calculation
Hello Everyone, I am having the following error messages while calculation Vx Using GUI ( Metrics -
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Vx Calculation
Hello Everyone, I am having the following error messages while calculation Vx Using GUI ( Metrics -
6/26/20
Kundan Singh Chufal
, …
Aditya Apte
5
6/16/20
I am trying to match the bench mark values
Thanks Aditya Just need one clarification. For wavelet filter what is the difference between
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I am trying to match the bench mark values
Thanks Aditya Just need one clarification. For wavelet filter what is the difference between
6/16/20
Kundan Singh Chufal
, …
iy...@mskcc.org
13
5/29/20
Variation in radiomics features
Can you please share your JSON settings file so we can help identify the issue? Also, we recently
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Variation in radiomics features
Can you please share your JSON settings file so we can help identify the issue? Also, we recently
5/29/20
Kundan Singh Chufal
, …
Myrediff
6
5/24/20
Error in radiomics feature calculations
I am not able to calculate features using filter Haralick and also for other features my jason
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Error in radiomics feature calculations
I am not able to calculate features using filter Haralick and also for other features my jason
5/24/20
Kundan Singh Chufal
,
ap...@mskcc.org
3
5/24/20
Create margin for structure
thanks a lot On Thursday, 21 May 2020 15:04:38 UTC+5:30, Kundan Singh Chufal wrote: Is it possible to
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Create margin for structure
thanks a lot On Thursday, 21 May 2020 15:04:38 UTC+5:30, Kundan Singh Chufal wrote: Is it possible to
5/24/20
DoHyeon Yoo
,
ap...@mskcc.org
3
2/7/20
DICOM load error
We have updated code on GitHub to fix this. Can you please pull the latest changes and try out.
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DICOM load error
We have updated code on GitHub to fix this. Can you please pull the latest changes and try out.
2/7/20
Ming
,
ap...@mskcc.org
9
12/26/19
crash when loading plan
Hi Aditya, The latest github update fixed the DVH error. By the way, I am using MATLAB 2018b. Thanks!
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crash when loading plan
Hi Aditya, The latest github update fixed the DVH error. By the way, I am using MATLAB 2018b. Thanks!
12/26/19
JO
,
ap...@mskcc.org
4
12/19/19
1D gamma in CERR
MATLAB's “interp1” should be sufficient for interpolation. I would suggest to write few more
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1D gamma in CERR
MATLAB's “interp1” should be sufficient for interpolation. I would suggest to write few more
12/19/19
Ming
2
12/19/19
installing CERR on MATLAB 2018b
I was able to install CERR using the old way: Under HOME tab, choose "Set Path" in the
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installing CERR on MATLAB 2018b
I was able to install CERR using the old way: Under HOME tab, choose "Set Path" in the
12/19/19
Kundan Singh Chufal
,
ap...@mskcc.org
2
11/2/19
DICOM Batch import
Dear Kundan, batchConvert.m had an unnecessary line of code which looked for directory names two
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DICOM Batch import
Dear Kundan, batchConvert.m had an unnecessary line of code which looked for directory names two
11/2/19
DoHyeon Yoo
,
ap...@mskcc.org
3
10/25/19
zero dose from TOPS RT Dose
Dear Aditya, Thank you for your reply, Unfortunately, I cannot share the DICOM file however I can
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zero dose from TOPS RT Dose
Dear Aditya, Thank you for your reply, Unfortunately, I cannot share the DICOM file however I can
10/25/19
Samuele Cavinato
,
Aditya Apte
3
10/22/19
Uniform dose inside the target
Hello, Thank you for your answer. I'll briefly explain what I do. 1) I load the plan
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Uniform dose inside the target
Hello, Thank you for your answer. I'll briefly explain what I do. 1) I load the plan
10/22/19
Ming
,
ap...@mskcc.org
3
10/2/19
merge plans
Hi Aditya, I did not know that I need to go to "Dose" menu to add and generate the merged
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merge plans
Hi Aditya, I did not know that I need to go to "Dose" menu to add and generate the merged
10/2/19
JO
10/2/19
Question: Function to extend CT dataset x cm in CERR?
Is there a function in CERR that could be used to extend the FOV/CT dataset some distance from the
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Question: Function to extend CT dataset x cm in CERR?
Is there a function in CERR that could be used to extend the FOV/CT dataset some distance from the
10/2/19
JO
9/24/19
Problems with importing doses to TPS exported from CERR
Hi. CERR on Linux 64-bit Matlab 2015a. On a CERR version with latest commits on January 12th 2019 I
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Problems with importing doses to TPS exported from CERR
Hi. CERR on Linux 64-bit Matlab 2015a. On a CERR version with latest commits on January 12th 2019 I
9/24/19
TA
,
ap...@mskcc.org
4
8/20/19
Importing DICOM-RT (RT-DOSE) into CERR
I still get the same error. Any suggestions would be really appreciated.
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Importing DICOM-RT (RT-DOSE) into CERR
I still get the same error. Any suggestions would be really appreciated.
8/20/19