How can I convert the pdb file into the AMBER file type?

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Jiang

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Nov 18, 2012, 9:02:59 AM11/18/12
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Dear Dr.,
Thank you for sharing this nice code.
I have a question with using cellulose builder, can you help me? I want to do some molecular dynamics by using AMBER. However, the atom types and sequence are not suit to AMBER. I have converted the pdb into the type suited to the leap of AMBER by the method, which combined the Cartesian coordinate of pdb provided by this program with the atom types and atom sequence defined by AMBER(force field GLYCAM_06). Is this method right? If wrong, how can I convert the pdb file into the AMBER file type prmtop?
Best regards
Xuewei Jiang
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