Urgent Help: Problems and error when importing SBML

Oscar Aragon

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Sep 7, 2019, 9:36:54 PM9/7/19

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Problems and error when importing SBML
Good morning

I am trying to import sbml file from a metabolic model but the program releases the following error.

I tried with different sbml models and it presents the same error.

How can I solve it.

Thanks in advance for any help you can give me.

Att

Oscar Aragón

Error:Created new network variable CB05GMMCLJUNG
 
 
Messages given by libSBML:
*************************
 
***End: Messages by libSBML***
 
 
Messages given by libSBML:
*************************
Error using TranslateSBML
First argument must be a filename
USAGE: [model, (errors), (version)] = TranslateSBML((filename), (validateFlag),
(verboseFlag), (fbcGeneProductOptions))

Error in CNAsbmlModel2MFNetwork (line 50)
[SBMLModel, errors]=TranslateSBML(filename,0,1);

Error in sbml_cna_import
 
Error while evaluating Menu Callback.

Another Error

Created new network variable CB06GMMC13AMIGUEL
 
 
Messages given by libSBML:
*************************
 
***End: Messages by libSBML***
 
 
Messages given by libSBML:
*************************
Error using TranslateSBML
First argument must be a filename
USAGE: [model, (errors), (version)] = TranslateSBML((filename), (validateFlag),
(verboseFlag), (fbcGeneProductOptions))

Error in CNAsbmlModel2MFNetwork (line 50)
[SBMLModel, errors]=TranslateSBML(filename,0,1);

Error in sbml_cna_import
 
Error while evaluating Menu Callback.

 
 
Reading the Metabolites ...
0 Metabolites
 
Reading the Macromolecules ...
0 Macromolecules
 
Reading the Reactions ... 
0 Reactions
 
Reading Macromolecule Composition ...
 
Reading Assembly Routes ...
0 Assembly Routes
 
 
Initializing interactive maps ....
 
 
Hint: Network map 1 can not be displayed in full resolution, activating zoom tools.

Created new network variable CB05GMMCLJUNG

Oscar Aragon

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Sep 7, 2019, 9:40:50 PM9/7/19

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Hi, I still have to say that I am using the 2010.2 version of CellNetAnalayzer and Matlab 2017.a.

The sbml models are genomic scale,

Thanks for the help.

Steffen

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Sep 9, 2019, 2:38:27 AM9/9/19

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Dear Oscar,

First of all, we recommend to download the latest CNA version.

Regarding your issue: it seems that the variable "filename" was not
correctly specified. It must be a character array, e.g. filename='model.xml'.

Does that help?

Best,
Steffen.

Oscar Aragon

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Sep 10, 2019, 1:44:14 PM9/10/19

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Thank you very much.

It worked with the last version of the software.

Thank you again

El sábado, 7 de septiembre de 2019, 20:36:54 (UTC-5), Oscar Aragon escribió:

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