CCP SyneRBI[bot]

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This is a Developer Mailing list for CCP SyneRBI (Collaborative Computational Project on Synergistic Reconstruction for Biomedical Imaging).

web: http://www.ccpsynerbi.ac.uk
code: https://github.com/SynerBI/SIRF

The main mailing lists are actually

This group (ccp-petmr-codebot@googlegroups.com) sends daily digests to the DEVEL JISCMail list.

Due to various nuances, it has been set up in such a way that GitHub notifications are sent to ccp.petmr.devel@gmail.com, which in turn forwards to ccp-petmr-codebot@googlegroups.com, which finally sends daily digests to SYNERBI-DEVEL@jiscmail.ac.uk.

If you would like any other integration service (similar to GitHub's notifications) to be posted to JISCMail lists via ccp.petmr.devel@gmail.com - simply email the latter.

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Casper

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Evgueni Ovtchinnikov2

11:35 AM

[SyneRBI/SIRF] Preparation branch for version 3.8.0 (PR #1273)

@evgueni-ovtchinnikov pushed 1 commit. a1b2d4c small edits in CHANGES.md to trigger Actions — View it

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[SyneRBI/SIRF] Preparation branch for version 3.8.0 (PR #1273)

@evgueni-ovtchinnikov pushed 1 commit. a1b2d4c small edits in CHANGES.md to trigger Actions — View it

11:35 AM

Kris Thielemans11

8:25 AM

[SyneRBI/SIRF] list-mode obj_fun.get_subset_sensitivity(0) returns None (Issue #1251)

Closed #1251 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF] list-mode obj_fun.get_subset_sensitivity(0) returns None (Issue #1251)

Closed #1251 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

8:25 AM

Kris Thielemans3

Jun 25

[SyneRBI/SIRF] CMake] add STIR_REGISTRIES to Reg executables (PR #1268)

Merged #1268 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF] CMake] add STIR_REGISTRIES to Reg executables (PR #1268)

Merged #1268 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 25

Evgueni Ovtchinnikov2

Jun 25

[SyneRBI/SIRF] Expose the STIR min/max-scale-factor in ScatterEstimation. (Issue #1270)

Closed #1270 as completed via #1271. — Reply to this email directly, view it on GitHub, or

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[SyneRBI/SIRF] Expose the STIR min/max-scale-factor in ScatterEstimation. (Issue #1270)

Closed #1270 as completed via #1271. — Reply to this email directly, view it on GitHub, or

Jun 25

Evgueni Ovtchinnikov16

Jun 25

[SyneRBI/SIRF] STIR min/max-scale-factor in ScatterEstimation exposed. (PR #1271)

Merged #1271 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF] STIR min/max-scale-factor in ScatterEstimation exposed. (PR #1271)

Merged #1271 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 25

Evgueni Ovtchinnikov

Jun 25

[SyneRBI/SIRF] SIRF 3.8.0 Release Checklist (Issue #1272)

Release Checklist Set version variable of the release for further steps, eg using the format VER=3.8.

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[SyneRBI/SIRF] SIRF 3.8.0 Release Checklist (Issue #1272)

Release Checklist Set version variable of the release for further steps, eg using the format VER=3.8.

Jun 25

Kris Thielemans2

Jun 22

[SyneRBI/SIRF-SuperBuild] USE_ACE_SYSTEM=OFF fails on Ubuntu 22.04 (Issue #909)

Closed #909 as completed via #910. — Reply to this email directly, view it on GitHub, or unsubscribe.

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[SyneRBI/SIRF-SuperBuild] USE_ACE_SYSTEM=OFF fails on Ubuntu 22.04 (Issue #909)

Closed #909 as completed via #910. — Reply to this email directly, view it on GitHub, or unsubscribe.

Jun 22

Kris Thielemans3

Jun 22

[SyneRBI/SIRF-SuperBuild] remove ACE as no longer needed by Gadgetron (PR #910)

Merged #910 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF-SuperBuild] remove ACE as no longer needed by Gadgetron (PR #910)

Merged #910 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 22

Kris Thielemans

Jun 22

[SyneRBI/SIRF] outdated find_package(CUDA) (Issue #1269)

https://github.com/SyneRBI/SIRF/blob/81f5c0a7878ed60577ee526abf8d0cd2b64e334f/src/xGadgetron/

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[SyneRBI/SIRF] outdated find_package(CUDA) (Issue #1269)

https://github.com/SyneRBI/SIRF/blob/81f5c0a7878ed60577ee526abf8d0cd2b64e334f/src/xGadgetron/

Jun 22

Kris Thielemans4

Jun 22

[SyneRBI/SIRF-SuperBuild] Update test_cil.sh to go back to normal CIL-version mechanism (PR #908)

success 😄 — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this

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[SyneRBI/SIRF-SuperBuild] Update test_cil.sh to go back to normal CIL-version mechanism (PR #908)

success 😄 — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this

Jun 22

Kris Thielemans2

Jun 22

[SyneRBI/SIRF-SuperBuild] build Docker jobs fail, but devel jobs are fine (Issue #907)

Closed #907 as completed via #908. — Reply to this email directly, view it on GitHub, or unsubscribe.

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[SyneRBI/SIRF-SuperBuild] build Docker jobs fail, but devel jobs are fine (Issue #907)

Closed #907 as completed via #908. — Reply to this email directly, view it on GitHub, or unsubscribe.

Jun 22

Kris Thielemans15

Jun 21

[SyneRBI/SIRF-SuperBuild] update parallelproj to 1.9.0 (and require it) (PR #906)

Merged #906 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF-SuperBuild] update parallelproj to 1.9.0 (and require it) (PR #906)

Merged #906 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 21

Margaret Duff10

Jun 21

[SyneRBI/SIRF-SuperBuild] DO NOT MERGE - Margaret just testing CIL/SIRF tests (PR #905)

Thanks both! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving

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[SyneRBI/SIRF-SuperBuild] DO NOT MERGE - Margaret just testing CIL/SIRF tests (PR #905)

Thanks both! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving

Jun 21

Jun 21

[SyneRBI/SIRF] Integer valued sirf.ObjectiveFunction.value (Issue #1170)

Fixed now - see #1264. @Imraj-Singh Please try again. — Reply to this email directly, view it on

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[SyneRBI/SIRF] Integer valued sirf.ObjectiveFunction.value (Issue #1170)

Fixed now - see #1264. @Imraj-Singh Please try again. — Reply to this email directly, view it on

Jun 21

Kris Thielemans9

Jun 21

[SyneRBI/SIRF] GitHub Actions fail on MR tests (Issue #1267)

Closed #1267 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF] GitHub Actions fail on MR tests (Issue #1267)

Closed #1267 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 21

Kris Thielemans2

Jun 20

[SyneRBI/SIRF] sirf.STIR.Poisson* objective function value is returned as float (Issue #1264)

Closed #1264 as completed via 81f5c0a. — Reply to this email directly, view it on GitHub, or

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[SyneRBI/SIRF] sirf.STIR.Poisson* objective function value is returned as float (Issue #1264)

Closed #1264 as completed via 81f5c0a. — Reply to this email directly, view it on GitHub, or

Jun 20

Kris Thielemans2

Jun 20

[SyneRBI/SIRF-Contribs] BSREM notebook improvements (PR #20)

Merged #20 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF-Contribs] BSREM notebook improvements (PR #20)

Merged #20 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 20

Evgueni Ovtchinnikov7

Jun 17

[SyneRBI/SIRF] SIRF 3.7.0 Release Checklist (Issue #1257)

Closed #1257 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

unread,

[SyneRBI/SIRF] SIRF 3.7.0 Release Checklist (Issue #1257)

Closed #1257 as completed. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 17

Kris Thielemans3

Jun 17

Re: [SyneRBI/SIRF-SuperBuild] Need to switch to use CMake's FindPython (#313)

This is now pretty urgent, as recent CMake claims this support will be removed. I've checked for

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Re: [SyneRBI/SIRF-SuperBuild] Need to switch to use CMake's FindPython (#313)

This is now pretty urgent, as recent CMake claims this support will be removed. I've checked for

Jun 17

Kris Thielemans4

Jun 17

[SyneRBI/SIRF] use more STIR container operations (PR #1265)

Merged #1265 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

unread,

[SyneRBI/SIRF] use more STIR container operations (PR #1265)

Merged #1265 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 17

Jun 17

[SyneRBI/PETRIC-backend] Dependencies to add to image (Issue #1)

I think this is somewhat outdated and comes from the PSMR school. Like there, we should not be adding

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[SyneRBI/PETRIC-backend] Dependencies to add to image (Issue #1)

I think this is somewhat outdated and comes from the PSMR school. Like there, we should not be adding

Jun 17

Kris Thielemans

Jun 12

[SyneRBI/SIRF-Exercises] Release v3.7.0 - v3.7.0

v3.7.0 Repository: SyneRBI/SIRF-Exercises · Tag: v3.7.0 · Commit: e610cd7 · Released by:

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[SyneRBI/SIRF-Exercises] Release v3.7.0 - v3.7.0

v3.7.0 Repository: SyneRBI/SIRF-Exercises · Tag: v3.7.0 · Commit: e610cd7 · Released by:

Jun 12

Casper da Costa-Luis

Jun 12

[SyneRBI/SIRF-SuperBuild] Release v3.7.0 - v3.7.0: Merge pull request #897 from SyneRBI/bump_cil_modules

v3.7.0: Merge pull request #897 from SyneRBI/bump_cil_modules Repository: SyneRBI/SIRF-SuperBuild ·

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[SyneRBI/SIRF-SuperBuild] Release v3.7.0 - v3.7.0: Merge pull request #897 from SyneRBI/bump_cil_modules

v3.7.0: Merge pull request #897 from SyneRBI/bump_cil_modules Repository: SyneRBI/SIRF-SuperBuild ·

Jun 12

Evgueni Ovtchinnikov6

Jun 11

[SyneRBI/SIRF] Continue working on moving Challenge data preparation utilities to SIRF. (PR #1266)

Merged #1266 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

unread,

[SyneRBI/SIRF] Continue working on moving Challenge data preparation utilities to SIRF. (PR #1266)

Merged #1266 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 11

Jun 10

[SyneRBI/SIRF-SuperBuild] CCPi regularisation fails test (Issue #832)

Closed #832 as completed via #897. — Reply to this email directly, view it on GitHub, or unsubscribe.

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[SyneRBI/SIRF-SuperBuild] CCPi regularisation fails test (Issue #832)

Closed #832 as completed via #897. — Reply to this email directly, view it on GitHub, or unsubscribe.

Jun 10

Edoardo Pasca56

Jun 10

[SyneRBI/SIRF-SuperBuild] update CIL and CCPi-Regularisation version and reinstate tests (PR #897)

Merged #897 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

unread,

[SyneRBI/SIRF-SuperBuild] update CIL and CCPi-Regularisation version and reinstate tests (PR #897)

Merged #897 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 10

Jun 7

[SyneRBI/SIRF-Contribs] partitioner code from CIL (Issue #19)

The following function is basically duplicating the Partitioner code from CIL https://github.com/

unread,

[SyneRBI/SIRF-Contribs] partitioner code from CIL (Issue #19)

The following function is basically duplicating the Partitioner code from CIL https://github.com/

Jun 7

Kris Thielemans4

Jun 7

[SyneRBI/SIRF-Contribs] partitioner/BSREM changes: use additive_term and more doc (PR #18)

Merged #18 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

unread,

[SyneRBI/SIRF-Contribs] partitioner/BSREM changes: use additive_term and more doc (PR #18)

Merged #18 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 7

Kris Thielemans4

Jun 6

[SyneRBI/SIRF] Revert "Moving SyneRBI-Challenge nema-data utilities to SIRF (#1241)" (PR #1263)

Merged #1263 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

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[SyneRBI/SIRF] Revert "Moving SyneRBI-Challenge nema-data utilities to SIRF (#1241)" (PR #1263)

Merged #1263 into master. — Reply to this email directly, view it on GitHub, or unsubscribe. You are

Jun 6

Jun 6

[SyneRBI/SIRF] Update ch2sirf with SIRF master (PR #1262)

we'll revert #1241 anyway. — Reply to this email directly, view it on GitHub, or unsubscribe. You

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[SyneRBI/SIRF] Update ch2sirf with SIRF master (PR #1262)

we'll revert #1241 anyway. — Reply to this email directly, view it on GitHub, or unsubscribe. You

Jun 6

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