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cBioPortal for Cancer Genomics Discussion Group
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cBioPortal for Cancer Genomics Discussion Group
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olofin daniel
,
Nikolaus Schultz
2
Jun 24
Inquiry About Using cBioPortal Data for Publication
Dear Daniel, Thank you for your interest in using data from cBioPortal. There are no restrictions
unread,
Completed
Inquiry About Using cBioPortal Data for Publication
Dear Daniel, Thank you for your interest in using data from cBioPortal. There are no restrictions
Jun 24
Bullen, Catherine (NIH/NCI) [C]
,
Benjamin Gross
4
Jun 18
Mutation Count discrepancy
Hi Catie, I've added Ramya Madupuri to this email. She is on our data curation team and will be
unread,
Completed
Mutation Count discrepancy
Hi Catie, I've added Ramya Madupuri to this email. She is on our data curation team and will be
Jun 18
Hao-Kuen Lin
,
Benjamin Gross
3
Jun 16
Question regarding data harmonizing
Thank you! On Mon, Jun 16, 2025 at 9:54 AM Benjamin Gross <benjami...@gmail.com> wrote: Hi
unread,
Completed
Question regarding data harmonizing
Thank you! On Mon, Jun 16, 2025 at 9:54 AM Benjamin Gross <benjami...@gmail.com> wrote: Hi
Jun 16
Ji Hen Lau
,
Benjamin Gross
3
Jun 15
Import patient without sample
Hi Benjamin, Thanks for the clarification ! Ji Hen On Saturday, 14 June 2025 at 00:04:16 UTC+8
unread,
Completed
Import patient without sample
Hi Benjamin, Thanks for the clarification ! Ji Hen On Saturday, 14 June 2025 at 00:04:16 UTC+8
Jun 15
Qingzhi Liu
,
Pieter Lukasse
2
Jun 2
Request for Clinical Information Website
Hi Qingzhi, Thanks for reporting. Can you please add some more information on where this is happening
unread,
Completed
Request for Clinical Information Website
Hi Qingzhi, Thanks for reporting. Can you please add some more information on where this is happening
Jun 2
Guy Froyen
,
de Bruijn, Ino
5
Jun 2
data updates?
Hi Ino, It's a pity that the COSMIC column is no longer available in cBioPortal but I understand
unread,
Completed
data updates?
Hi Ino, It's a pity that the COSMIC column is no longer available in cBioPortal but I understand
Jun 2
Aharon Bensadoun
,
Pieter Lukasse
2
Jun 2
Entra ID saml using Docker
Hi Aharon, Thanks for your question. I'm not sure if you already found the deployment docs? You
unread,
Completed
Entra ID saml using Docker
Hi Aharon, Thanks for your question. I'm not sure if you already found the deployment docs? You
Jun 2
Igor Entin
,
de Bruijn, Ino
2
Jun 6
Fw: Gene expression data with sensitivity scores
Hi Igor, Thanks for reaching out! From the homepage there is a link to filter by “data type”. You can
unread,
Completed
Fw: Gene expression data with sensitivity scores
Hi Igor, Thanks for reaching out! From the homepage there is a link to filter by “data type”. You can
Jun 6
Strunilin, Ilya
,
Aaron L
2
May 27
Error log
Hi Ilya, Please try again thanks, it should be resolved. --Aaron On Tue, May 27, 2025 at 7:25 AM
unread,
Completed
Error log
Hi Ilya, Please try again thanks, it should be resolved. --Aaron On Tue, May 27, 2025 at 7:25 AM
May 27
Kinga Michalik
,
de Bruijn, Ino
2
Jun 6
Functionalities
Hi Kinga, Thanks for reaching out! > 1. do the reverse selection? For now I can only select
unread,
Completed
Functionalities
Hi Kinga, Thanks for reaching out! > 1. do the reverse selection? For now I can only select
Jun 6
Ana Clara Carrera
, …
de Bruijn, Ino
12
Jun 6
cBioPortal user reported error
Hi Rachel, Do you still see this issue? Thanks! Ino From: cbiop...@googlegroups.com <cbioportal@
unread,
Completed
cBioPortal user reported error
Hi Rachel, Do you still see this issue? Thanks! Ino From: cbiop...@googlegroups.com <cbioportal@
Jun 6
Andrea Aquino Cruz
,
Priti Kumari
3
Apr 22
Request for TP53 Data
Hi Andrea, You can download all the data from the Datahub. Hope this helps, Priti On Tue, Apr 22,
unread,
Completed
Request for TP53 Data
Hi Andrea, You can download all the data from the Datahub. Hope this helps, Priti On Tue, Apr 22,
Apr 22
彭仲特
,
Priti Kumari
2
Apr 21
request data
Hi zhongte, Source data for TCGA studies are available in the Genomic Data Commons. They also have
unread,
Completed
request data
Hi zhongte, Source data for TCGA studies are available in the Genomic Data Commons. They also have
Apr 21
Lucas Wang
,
Priti Kumari
2
Apr 22
Mutation
Hi Lucas, You can download all mutations from the Datahub. We do not keep information on the
unread,
Completed
Mutation
Hi Lucas, You can download all mutations from the Datahub. We do not keep information on the
Apr 22
Ji Hen Lau
,
Priti Kumari
4
Apr 22
Issue with Discrete CNA Not Showing in Mutations Tab (CGHcall, sWGS)
Hi, I think I kind of sorted the issue out. It seems there's some internal data structure error
unread,
Completed
Issue with Discrete CNA Not Showing in Mutations Tab (CGHcall, sWGS)
Hi, I think I kind of sorted the issue out. It seems there's some internal data structure error
Apr 22
Filliol, Aveline
,
de Bruijn, Ino
2
Apr 11
Multiplex IF data deposition
Hi Aveline, Thanks so much for reaching out! We can def support visualization of multiplex IF data We
unread,
Completed
Multiplex IF data deposition
Hi Aveline, Thanks so much for reaching out! We can def support visualization of multiplex IF data We
Apr 11
MOLONEY, Kate (SALISBURY NHS FOUNDATION TRUST)
, …
Benjamin Gross
6
Apr 18
GENIE data access
Ok, let me know if you run into any more issues logging in. -Benjamin On Apr 18, 2025, at 5:21 PM,
unread,
Completed
GENIE data access
Ok, let me know if you run into any more issues logging in. -Benjamin On Apr 18, 2025, at 5:21 PM,
Apr 18
Soheil Shams
,
Prasanna Jagannathan
3
Apr 9
downloading expression and mutation data
Dear Jag Thank you for the helpful reply. Best regards Soheil From: Prasanna Jagannathan <
unread,
Completed
downloading expression and mutation data
Dear Jag Thank you for the helpful reply. Best regards Soheil From: Prasanna Jagannathan <
Apr 9
Md. Razib Khan
,
Pieter Lukasse
3
Apr 1
Request for instructions for generating waterfall plot using cBioportal
Hi Razib, You are right, those steps are outdated. I have raised this issue as well. Just for the
unread,
Completed
Request for instructions for generating waterfall plot using cBioportal
Hi Razib, You are right, those steps are outdated. I have raised this issue as well. Just for the
Apr 1
Zheng, Nianye
,
Ritika Kundra
2
Apr 2
inquriry about impact data before 2016
Hi Nianye, I will move this to our internal MSK email to discuss this further. Thanks, Ritika On Thu,
unread,
Completed
inquriry about impact data before 2016
Hi Nianye, I will move this to our internal MSK email to discuss this further. Thanks, Ritika On Thu,
Apr 2
Harika Gannu
, …
de Bruijn, Ino
7
May 13
compatible keycloak version for cbioportal version 6.0.24
Hi Niels, Thanks for checking in – replied here: https://github.com/cBioPortal/cbioportal/issues/
unread,
Completed
compatible keycloak version for cbioportal version 6.0.24
Hi Niels, Thanks for checking in – replied here: https://github.com/cBioPortal/cbioportal/issues/
May 13
内田士朗
,
Priti Kumari
2
Feb 17
Inquiry Regarding Mutation Rate Calculation in cBioPortal’s Oncoprint
Hello Shiro, Is this using the public cBioPortal? Are you able to send the url to your query to
unread,
Completed
Inquiry Regarding Mutation Rate Calculation in cBioPortal’s Oncoprint
Hello Shiro, Is this using the public cBioPortal? Are you able to send the url to your query to
Feb 17
Abubakr El Sobky
,
de Bruijn, Ino
2
Feb 17
Google Summer of Code
Hi, Thanks for reaching out! We have applied for GSoC 2025 as a mentoring organization, but won't
unread,
Completed
Google Summer of Code
Hi, Thanks for reaching out! We have applied for GSoC 2025 as a mentoring organization, but won't
Feb 17
Joseph Celidonio
,
Priti Kumari
8
Feb 19
Treatment Type
Hi Joe, It looks like there is a clinical field called "ICD10 classification" and based on
unread,
Completed
Treatment Type
Hi Joe, It looks like there is a clinical field called "ICD10 classification" and based on
Feb 19
Kilroy, Mary (kilroymk)
,
Prasanna Jagannathan
2
Jan 31
GENIEv17 Data
Hi Mary For Genie data, please use the URL https://genie.cbioportal.org You can submit a request to
unread,
Completed
GENIEv17 Data
Hi Mary For Genie data, please use the URL https://genie.cbioportal.org You can submit a request to
Jan 31
Ji Hen Lau
, …
Prasanna Jagannathan
8
Feb 5
Import New Reference Genome
Hi Jag, Thanks for the clarification! Regards, Ji Hen On Wednesday, 5 February 2025 at 08:56:05 UTC+8
unread,
Completed
Import New Reference Genome
Hi Jag, Thanks for the clarification! Regards, Ji Hen On Wednesday, 5 February 2025 at 08:56:05 UTC+8
Feb 5
Gupta, Princy
,
Pieter Lukasse
2
Jan 23
Inquiry About GENIE Cohort v17.0 Appendix Cancer Dataset on cBioPortal
marking as duplicate of https://groups.google.com/g/cbioportal/c/ernVNdWFyKo On Wednesday, January 22
unread,
Completed
Inquiry About GENIE Cohort v17.0 Appendix Cancer Dataset on cBioPortal
marking as duplicate of https://groups.google.com/g/cbioportal/c/ernVNdWFyKo On Wednesday, January 22
Jan 23
Jean Philippe Hugnot
Jan 10
Request for Guidance on Data Accessibility in cBioPortal
Dear BioPortal Team, I hope this message finds you well. I am reaching out regarding some WES data
unread,
Completed
Request for Guidance on Data Accessibility in cBioPortal
Dear BioPortal Team, I hope this message finds you well. I am reaching out regarding some WES data
Jan 10
Edoardo Garbo
,
Pieter Lukasse
3
Jan 27
MSKCC Chord TMB
Dear Pieter -- thank you for reaching out. The team was able to upload TMB data, so now I am all set.
unread,
Completed
MSKCC Chord TMB
Dear Pieter -- thank you for reaching out. The team was able to upload TMB data, so now I am all set.
Jan 27
Prashanth Bachu
,
Karthik Kalletla
2
12/16/24
Need Help in Setting up Keycloak Aunthentication to Cbioportal Using LDAP
Looks like a duplicate post. Please refer: https://groups.google.com/g/cbioportal/c/D0yVUP60F0I
unread,
Completed
duplicate
Need Help in Setting up Keycloak Aunthentication to Cbioportal Using LDAP
Looks like a duplicate post. Please refer: https://groups.google.com/g/cbioportal/c/D0yVUP60F0I
12/16/24