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mohammed asif
, …
Pieter Lukasse
7
Jul 26
Keycloak Saml Authentication issue
Hi Tim and Pieter, Thank you so much for your advice. I will work on the suggestions and get back to
unread,
Completed
Keycloak Saml Authentication issue
Hi Tim and Pieter, Thank you so much for your advice. I will work on the suggestions and get back to
Jul 26
Juan Antonio Raygoza Garay
, …
JJ Gao
4
Jul 18
Hide Clinical data tab
Just to add that while it's not possible to high the clinical data tab, there is a feature to
unread,
Completed
Hide Clinical data tab
Just to add that while it's not possible to high the clinical data tab, there is a feature to
Jul 18
Harry Sun
,
JJ Gao
2
Jul 3
How to git previous cbioportal release?
Hi Harry, You can download the previous version here: Releases · cBioPortal/cbioportal (github.com)
unread,
Completed
How to git previous cbioportal release?
Hi Harry, You can download the previous version here: Releases · cBioPortal/cbioportal (github.com)
Jul 3
Кирилл Крюков
,
Nikolaus Schultz
2
Jul 1
structural variants
Hi, Thank you for your feedback - we will forward this to the OncoKB team. Niki. On Jun 28, 2024, at
unread,
Completed
structural variants
Hi, Thank you for your feedback - we will forward this to the OncoKB team. Niki. On Jun 28, 2024, at
Jul 1
Zhengyang Yan
,
JJ Gao
2
Jun 28
Some Feature Requests
Hi Zhengyang, Please find the gene lists of the panels here: https://github.com/cBioPortal/datahub/
unread,
Completed
Some Feature Requests
Hi Zhengyang, Please find the gene lists of the panels here: https://github.com/cBioPortal/datahub/
Jun 28
Michela Francesconi
,
JJ Gao
2
Jun 27
Info for the comparing samples based on expression level of genes
Hi Michela, Thanks for contacting us but this support group is specific to cBioPortal. You might want
unread,
Completed
Info for the comparing samples based on expression level of genes
Hi Michela, Thanks for contacting us but this support group is specific to cBioPortal. You might want
Jun 27
John Lockhart
,
Ramya Madupuri
2
Jun 28
OncoSG-LUAD mRNA expression (log RNAseq V2 RSEM) uses z-normalized data
Hi John, Thank you for bringing this to our attention. We confirmed that the RSEM data was normalized
unread,
Completed
OncoSG-LUAD mRNA expression (log RNAseq V2 RSEM) uses z-normalized data
Hi John, Thank you for bringing this to our attention. We confirmed that the RSEM data was normalized
Jun 28
mohammed asif
,
Priti Kumari
2
Jun 27
Data Security for Local Docker Deployment of cBioPortal
Hi Mohammed, You can refer to our Authentication and Authorization section in the cBioPortal doc here
unread,
Completed
Data Security for Local Docker Deployment of cBioPortal
Hi Mohammed, You can refer to our Authentication and Authorization section in the cBioPortal doc here
Jun 27
Aula Ammar
,
Nikolaus Schultz
3
Jun 26
Lollipop of APC starts at exon 2 instead of exon 1
Hi Niki, Thanks a lot for the clarification! Kind Regards Aula From: Nikolaus Schultz <nschultz@
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Completed
Lollipop of APC starts at exon 2 instead of exon 1
Hi Niki, Thanks a lot for the clarification! Kind Regards Aula From: Nikolaus Schultz <nschultz@
Jun 26
Larissa Kluxen
,
JJ Gao
2
Jun 20
MANE Ensembl Match
Hi Larissa, ENST00000675843 is a grch38-specific transcript ID but cBioPortal is still using grch37 (
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Completed
MANE Ensembl Match
Hi Larissa, ENST00000675843 is a grch38-specific transcript ID but cBioPortal is still using grch37 (
Jun 20
soumaya rafii
,
JJ Gao
2
Jun 20
Clarification on mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
Hi Soumaya, The TCGA PanCancer Atlas studies use RSEM normalized data [1] followed by batch
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Completed
Clarification on mRNA Expression, RSEM (Batch normalized from Illumina HiSeq_RNASeqV2)
Hi Soumaya, The TCGA PanCancer Atlas studies use RSEM normalized data [1] followed by batch
Jun 20
Maria Escurriola
, …
Olivia Tort
8
Jul 22
Request for Permission to Use and Database Logo
Dear JJ, Many thanks on behalf of the IRB Barcelona team. Best regards, Olivia On Fri, Jul 19, 2024
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Completed
Request for Permission to Use and Database Logo
Dear JJ, Many thanks on behalf of the IRB Barcelona team. Best regards, Olivia On Fri, Jul 19, 2024
Jul 22
Lee, Daniel
,
Tali Mazor
3
Jun 18
Inquiry on survival analysis
Dear Tali, Noted with thanks! All the best, Daniel Lee From: Tali Mazor <tma...@ds.dfci.harvard.
unread,
Completed
Inquiry on survival analysis
Dear Tali, Noted with thanks! All the best, Daniel Lee From: Tali Mazor <tma...@ds.dfci.harvard.
Jun 18
Christophe Brun
,
de Bruijn, Ino
2
Jun 4
upgrade server to v6
Hi Christophe, Thanks for reaching out! There is a migration guide here: https://docs.cbioportal.org/
unread,
Completed
upgrade server to v6
Hi Christophe, Thanks for reaching out! There is a migration guide here: https://docs.cbioportal.org/
Jun 4
内田士朗
,
de Bruijn, Ino
2
Jun 5
Inquiry Regarding Antibody Used for CDH1 (E-cadherin) in TCGA PanCancer Atlas RPPA Data
Dear Dr. Uchida, Thanks for reaching out! I am not super familiar with the RPPA data but I think you
unread,
Completed
Inquiry Regarding Antibody Used for CDH1 (E-cadherin) in TCGA PanCancer Atlas RPPA Data
Dear Dr. Uchida, Thanks for reaching out! I am not super familiar with the RPPA data but I think you
Jun 5
Anne Macleod
,
Nikolaus Schultz
3
Jul 12
TCGA-COAD Germline Mutations
Many thanks for your help with this. I was wondering if you could assist in an additional query- is
unread,
Completed
TCGA-COAD Germline Mutations
Many thanks for your help with this. I was wondering if you could assist in an additional query- is
Jul 12
Noelia Rodríguez
,
de Bruijn, Ino
3
Jun 5
Help in setting up keycloak for cBioportal authentication
That's great to hear! Thanks for sharing your solution! Let us know if you run into other issues
unread,
Completed
Help in setting up keycloak for cBioportal authentication
That's great to hear! Thanks for sharing your solution! Let us know if you run into other issues
Jun 5
Zhou, Ting
,
de Bruijn, Ino
3
Jun 5
questions: "not enough memory to open this page"
Thank you so much, Ino! Ting From: de Bruijn, Ino <debr...@mskcc.org> Sent: Wednesday, June 5,
unread,
Completed
questions: "not enough memory to open this page"
Thank you so much, Ino! Ting From: de Bruijn, Ino <debr...@mskcc.org> Sent: Wednesday, June 5,
Jun 5
aghil hooshmand
, …
aghil hooshmand
7
Jun 10
deploying cbioportal and keycloak in AWS..Invalid requster
Many thanks Gaofei, I have changed the keycloak settings and now it has correctd! here is my new
unread,
Completed
deploying cbioportal and keycloak in AWS..Invalid requster
Many thanks Gaofei, I have changed the keycloak settings and now it has correctd! here is my new
Jun 10
bara hammadeh
,
Mirella Kalafati
2
May 27
Tutorials request
Hello Bara, You can download the tutorial materials from here. Additionally, documentation for
unread,
Completed
Tutorials request
Hello Bara, You can download the tutorial materials from here. Additionally, documentation for
May 27
Abdullah Nasir
,
Zeynep Karagöz
2
May 27
Sample vs patient data
Hi Abdullah, Thanks for reaching out. For your questions: 1) Duplicate sample and patient IDs are not
unread,
Completed
Sample vs patient data
Hi Abdullah, Thanks for reaching out. For your questions: 1) Duplicate sample and patient IDs are not
May 27
Shailesh Mahto
,
Zeynep Karagöz
2
May 27
Filter studies with certain columns(PFS_MONTHS)
Hi Shailesh, Thanks for contacting us with your question. You can use the data type filter on the
unread,
Completed
Filter studies with certain columns(PFS_MONTHS)
Hi Shailesh, Thanks for contacting us with your question. You can use the data type filter on the
May 27
Ron Smits
,
Nikolaus Schultz
2
May 22
overlapping data
Hi Ron, The three overlapping studies are different versions of the TCGA data. It is probably best to
unread,
Completed
overlapping data
Hi Ron, The three overlapping studies are different versions of the TCGA data. It is probably best to
May 22
Rich, Joseph M.
,
Sowmiyaa Kumar
2
May 27
Downloading structural variation data
Hi Joseph, Thank you for your question! To get the structural variant data for the msk impact study,
unread,
Completed
Downloading structural variation data
Hi Joseph, Thank you for your question! To get the structural variant data for the msk impact study,
May 27
Shivani Golem
,
Nikolaus Schultz
3
May 21
Copy number assessment question
Hi Shivani, I am adding the Google Group back to cc. Yes, many studies include overall survival data.
unread,
Completed
Copy number assessment question
Hi Shivani, I am adding the Google Group back to cc. Yes, many studies include overall survival data.
May 21
Huang, Shengbing, M.S.
, …
Van Grabner
5
Jun 24
FW: "Deploy with Docker" doesn't work
Hello Dr. Huang, I am also trying to deploy a cBioPortal instance on a GCP virtual machine. I tried
unread,
Completed
FW: "Deploy with Docker" doesn't work
Hello Dr. Huang, I am also trying to deploy a cBioPortal instance on a GCP virtual machine. I tried
Jun 24
Kristina Cook
,
Charles Haynes
2
May 21
pediatric cbioportal not working?
Hey, PedcbioPortal should be back up. Sorry for the inconvenience. Thank you On Monday, May 20, 2024
unread,
Completed
pediatric cbioportal not working?
Hey, PedcbioPortal should be back up. Sorry for the inconvenience. Thank you On Monday, May 20, 2024
May 21
Prem Shenoy
,
Nikolaus Schultz
2
May 20
DEGs Related problem
Hi Prem, It seems like this is a question about data from the GDC, not from cBioPortal. Can you
unread,
Completed
DEGs Related problem
Hi Prem, It seems like this is a question about data from the GDC, not from cBioPortal. Can you
May 20
Ölsner, Laura
, …
Shaun Bruner
6
Jun 11
Error: Unsuccessful HTTP response, local instance
Hi Laura, Could you expand on what the issues regarding loading OncoKB were and how you resolved that
unread,
Completed
Error: Unsuccessful HTTP response, local instance
Hi Laura, Could you expand on what the issues regarding loading OncoKB were and how you resolved that
Jun 11
Jackeline Elizabeth Paredes Astete
, …
Claudia Ines Gloria Machicado Rivero
5
Jun 11
Data Query
https://www.ensembl.org/info/about/contact/index.html El vie, 31 may 2024 a las 12:10, Jackeline
unread,
Completed
Data Query
https://www.ensembl.org/info/about/contact/index.html El vie, 31 may 2024 a las 12:10, Jackeline
Jun 11