Error accessing data

[Boer, Elena]

Hello,

I encountered the error below when doing the following:

1. Click Lymphoid, select all listed studies matching filter

2. Click Myeloid, select all listed studies matching filter

3. Click Query by Gene

4. Enter SF3B1 in User-defined List

5. Click Submit Query

{"type":"ErrorBoundary","log":"TypeError: Cannot read properties of undefined (reading 'chromosome')","url":"https://www.cbioportal.org/results/oncoprint?cancer_study_list=all_stjude_2015%2Call_stjude_2016%2Cbll_target_gdc%2Clcll_broad_2013%2Ccll_broad_2015%2Ccll_broad_2022%2Ccll_iuopa_2015%2Ccllsll_msk_2026%2Ccllsll_icgc_2011%2Cchl_sccc_2023%2Cctcl_columbia_2015%2Cdlbcl_dfci_2018%2Cdlbc_broad_2012%2Cdlbcl_duke_2017%2Cmbn_msk_2024%2Cdlbc_tcga_pan_can_atlas_2018%2Cdlbclnos_tcga_gdc%2Cnhl_bcgsc_2013%2Cdlbc_tcga%2Clymphoma_cellline_msk_2020%2Cmcl_idibips_2013%2Cmbn_sfu_2023%2Cmbn_mdacc_2013%2Cmtnn_msk_2022%2Cmm_broad%2Cnhl_bcgsc_2011%2Call_phase2_target_2018_pub%2Cpcnsl_msk_2024%2Cpcnsl_mayo_2015%2Calal_target_gdc%2Caml_ohsu_2022%2Caml_ohsu_2018%2Caml_target_gdc%2Caml_tcga_gdc%2Claml_tcga%2Claml_tcga_pub%2Claml_tcga_pan_can_atlas_2018%2Cmnm_washu_2016%2Chdcn_msk_2025%2Chistiocytosis_cobi_msk_2019%2Call_stjude_2013%2Cmds_tokyo_2011%2Cmds_mskcc_2020%2Cmds_iwg_2022%2Cmpn_cimr_2013%2Caml_stjude_2024%2Caml_target_2018_pub&Z_SCORE_THRESHOLD=2.0&RPPA_SCORE_THRESHOLD=2.0&profileFilter=mutations%2Cstructural_variants%2Ccna%2Cgistic&case_set_id=all&gene_list=SF3B1&geneset_list=%20&tab_index=tab_visualize&Action=Submit"}

Thanks,

Elena Boer

Elena Boer, PhD

Clinical Variant Scientist, Oncology Lead

Genomic Analysis

aruplab.com

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[Nikolaus Schultz]

Hi,

Thank you for reporting this issue. We are looking into the source and are trying to have a fix as soon as possible. Apologies for the inconvenience. 

Niki.

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[Nikolaus Schultz]

Hi,

This issue has been resolved - thank you for your patience. Please let us know if you still have issues.

Niki.

[Boer, Elena]

Hi Niki,

Thank you for letting me know! Happy to hear this.

Cheers,

Elena

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From: Nikolaus Schultz <nsch...@gmail.com>
Sent: Thursday, July 16, 2026 10:04 AM
To: Boer, Elena <elena...@aruplab.com>
Cc: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: Re: [cbioportal] Error accessing data

 

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