generic_assay_type: TREATMENT_RESPONSE

[Aaron Atkinson]

Is it possible to link treatment responses to SAMPLE_ID rather than PATIENT_ID?

Much like in the CCLE 2019 study, the data I am loading are pdx, pdo, pdox, pdxo's etc. 

Or, would all those patient and patient-derived samples have to be loaded as psuedo-single samples?

Thanks, Aaron Atkinson.  

High-Throughput Sequencing & Bioinformatic Analysis
Huntsman Cancer Institute
2000 Circle of Hope, Room 1715
SLC, UT 84112 - 801.213.6037

[Sjoerd van Hagen]

Hi Aaron,

If you are referring to the treatment response datatype described here, then by default it is on the sample level, see https://docs.cbioportal.org/file-formats/#note-on-patient_level for more information.

Best,

Sjoerd.

---

Sjoerd van Hagen

Team Lead cBioPortal & Open Targets

E sjo...@thehyve.nl

T +31 30 700 9713

W thehyve.nl

    

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