Whole Gene Deletions

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niels bohr

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Jul 22, 2022, 12:22:32 PM7/22/22
to cBioPortal for Cancer Genomics Discussion Group
Greetings,

we are using cbioportal for our research and are (successfully) importing data to a local instance.
So far this worked pretty well, however we don't know how to tell cbioportal when a gene is not only partially mutated but completely missing from a sample.
Is there anyway that cbioportal can display this case?

Best wishes,
Niels

JJ Gao

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Jul 22, 2022, 1:00:34 PM7/22/22
to niels bohr, cBioPortal for Cancer Genomics Discussion Group
Hi Niels,

I am wondering if you can import the whole gene deletions as copy number events?

Best,
-JJ

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