Help with Treatment Information in cBioPortal

[Nguyen, Kirsten]

I would like to access treatment information per sample for this study. I see that this study does have treatment information. On the webpage explorer, the only information at the study level is whether people received treatment or not. When I'm in Rstudio, there's nothing on treatment information when I get all clinical attributes from a study and from individual samples. When I click on a sample in the webpage explorer, I can see really detailed information on treatments, including agents and time periods. How can I pull this specific treatment information into Rstudio?

Thank you!

[Nguyen, Kirsten]

Nevermind! Found an earlier response on the GoogleGroups from the emailed titled "Batch download of patient timeline data" and addressed this using the function getAllClinicalEventsOfPatientInStudyUsingGET from the API https://www.cbioportal.org/api/v3/api-docs (for others' future reference). Thanks! 

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From: Nguyen, Kirsten
Sent: Saturday, September 5, 2026 3:26 PM
To: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: Help with Treatment Information in cBioPortal

 

[Benjamin Gross]

Hi Kirsten,

Glad you found the data on your own.  You can also find data (tsv files) directly in our Datahub repository.  In this case the data is found here:

Best,

Benjamin

On Sep 5, 2026, at 7:45 PM, 'Nguyen, Kirsten' via cBioPortal for Cancer Genomics Discussion Group <cbiop...@googlegroups.com> wrote:

Nevermind! Found an earlier response on the GoogleGroups from the emailed titled "Batch download of patient timeline data" and addressed this using the function getAllClinicalEventsOfPatientInStudyUsingGET from the APIhttps://www.cbioportal.org/api/v3/api-docs (for others' future reference). Thanks! 

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From: Nguyen, Kirsten
Sent: Saturday, September 5, 2026 3:26 PM
To: cbiop...@googlegroups.com <cbiop...@googlegroups.com>
Subject: Help with Treatment Information in cBioPortal

 

I would like to access treatment information per sample for this study. I see that this study does have treatment information. On the webpage explorer, the only information at the study level is whether people received treatment or not. When I'm in Rstudio, there's nothing on treatment information when I get all clinical attributes from a study and from individual samples. When I click on a sample in the webpage explorer, I can see really detailed information on treatments, including agents and time periods. How can I pull this specific treatment information into Rstudio?

Thank you!

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