request data

[彭仲特]

Dear cBioPortal Team,

I hope this message finds you well.

I am currently using cBioPortal for my research and noticed that the available RNA-seq data is provided in processed formats such as FPKM. I would like to kindly ask whether it is possible to access the raw count data for the samples of interest, or if you could advise on where such data might be obtained.

Thank you very much for your time and assistance.

Best regards,

zhongte Peng

中山一院员工之家 彭仲特

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[Priti Kumari]

Hi zhongte,

Source data for TCGA studies are available in the Genomic Data Commons. They also have documentation on their site about their processing that may include more details. 

For other studies, you could reach out to the authors of the publication to obtain the raw data.

Hope this helps,

Best,

Priti

 

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