Ontologies/vocabularies used for your clinical attributes

[Amin Nematbakhsh]

Dear Madam or Sir,

I am writing to you to inquire about the ontologies/vocabularies for the clinical attributes used in your valuable datasets. I would appreciate it if you let me know which community or machine-readable vocabularies like "http://ontologies.berkeleybop.org/" or "ionic.org" are used for the clinical attributes in your datasets, if there is any specific one. 

Best regards,
Amin Nematbakhsh

[Ritika Kundra]

Hi Amin,

We maintain our own data dictionary, populated as we curate data for cBioPortal. As such it's not a formalized vocabulary that grows with the clinical data we receive. We are working on switching to a standard library but that will take some time.

Thanks,

Ritika

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