I have a question about Oncoprint.

[内田士朗]

Dear to whom it may concern

Oncoprint does not show genes with 0% mutation rate. How can I add genes with 0% mutation rate to the table?
I have a question: "How can I add a gene with a mutation rate of 0% to the table?

Sincerely, 

Shiro Uchida

[de Bruijn, Ino]

Hi Shiro Uchida,

 

Thanks for reaching out!

 

Just to clarify your question. I see the website can show genes with 0% mutation rate, see e.g.:

 

https://bit.ly/3L6k3Lt

 

But I’m guessing you are asking how one can show a 0% alteration rate using the oncoprinter here:

 

https://www.cbioportal.org/oncoprinter

 

This is currently not possible as far as I know, but will confirm. One other option is to download the resulting oncoprint as an SVG and add the gene with 0% manually

 

Thanks!

Ino

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