Cbioportal Mutation table

[Ashish Jain]

How can we convert the amino acid change format from HGVsp to HGVsp_short which is supported by cbioportal?

[JianJiong Gao]

Hi Ashish,

We convert the three-letter code into one-letter code for amino acids.
You can find some perl code in the vcf2maf tool (search hgvs_p_short).

https://github.com/ckandoth/vcf2maf/blob/master/vcf2maf.pl

-JJ

On Mon, Jun 15, 2015 at 3:02 PM, Ashish Jain <jain.ash...@gmail.com> wrote:
> How can we convert the amino acid change format from HGVsp to HGVsp_short
> which is supported by cbioportal?
>

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